Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,220,200 – 25,220,332 |
Length | 132 |
Max. P | 0.871783 |
Location | 25,220,200 – 25,220,305 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.63 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -28.47 |
Energy contribution | -29.83 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.33 |
Structure conservation index | 0.90 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25220200 105 + 27905053 GCAGGAAA-UGGGGAAACCUCACAGACAGGCCGACCAAGACCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGG ...((((.-.(((....)))........(((((.....(((........)))....)))))..(((....)))...))))...(((((....)))))......... ( -30.50) >DroSec_CAF1 78437 105 + 1 GCGGAAAA-UGGGGAAACCUCACAGACAGGCCGACCAAGACCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGG ..((((..-.(((....)))........(((((.....(((........)))....)))))..(((....)))...))))...(((((....)))))......... ( -30.60) >DroSim_CAF1 78785 105 + 1 GCUGAAAA-UGGGGAAACCUCACAGACAGGCCGACCAAGACCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGG ((..(...-.(((....)))........((((..(((.(((........)))....)))...))))..)..)).....((((.(((((....))))).....)))) ( -30.60) >DroEre_CAF1 81605 105 + 1 GCGGAAAA-UGGGGAAACCUCACAGACAGGCCGACCAAGACCGAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGG (((.....-.(((....)))........((((..(((....((((.......)))))))...))))......)))...((((.(((((....))))).....)))) ( -31.60) >DroYak_CAF1 81536 106 + 1 GCGGAAAACUGGGGAAACCUCACAGACAGGCCGACCAAGACCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGG ..((((..(((((....))...)))...(((((.....(((........)))....)))))..(((....)))...))))...(((((....)))))......... ( -31.30) >DroAna_CAF1 76612 99 + 1 GUGGAAA---GGGGAAACCUCACAGACAGGCCG----AGACCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCUUUCCAGACAAGUGAAAACUUGAUAAACUGG .((((((---(((....))..........((((----((..((.....))..)))(((((...)))))..))).)))))))..(((((....)))))......... ( -35.20) >consensus GCGGAAAA_UGGGGAAACCUCACAGACAGGCCGACCAAGACCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGG ((........(((....)))........(((((.....(((........)))....)))))..(((....)))))...((((.(((((....))))).....)))) (-28.47 = -29.83 + 1.36)
Location | 25,220,239 – 25,220,332 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.25 |
Mean single sequence MFE | -35.83 |
Consensus MFE | -25.27 |
Energy contribution | -27.38 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.14 |
Mean z-score | -2.23 |
Structure conservation index | 0.71 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25220239 93 + 27905053 -----------CCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGGGUCAGCCCAAAAAGGGGCGGAUUGGGG------------- -----------((((...(((((((.(((((...)))))((((.((..(((((.(((((....))))).....)))))...))))))...))))))).))))..------------- ( -34.90) >DroPse_CAF1 83936 93 + 1 GAGAGGAGCAGCCAAGUAUUGU---UGUGGCCGGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGGGUCACC--------GGGCGGUCUGCGG------------- .......((((((..((.(((.---.(((((((((...)))))).)))..))).(((((....)))))))...((((....))--------))..)).))))..------------- ( -32.80) >DroSec_CAF1 78476 92 + 1 -----------CCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGGGUCAGCCCAAAA-CGGGCGGAUUGGGG------------- -----------((((...((((((..(((((...)))))((((.((..(((((.(((((....))))).....)))))...))))))..-.)))))).))))..------------- ( -34.40) >DroEre_CAF1 81644 92 + 1 -----------CCGAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGGGUCAGCCCAAAAGGGGGCGGAUUGG-G------------- -----------((((...(((((((((((((...)))))((((.((..(((((.(((((....))))).....)))))...))))))..)))))))).))))-.------------- ( -38.10) >DroYak_CAF1 81576 92 + 1 -----------CCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGGGUCAGCCCAAAAGGGGGCAGAUUGG-G------------- -----------((((...(((((((((((((...)))))((((.((..(((((.(((((....))))).....)))))...))))))..)))))))).))))-.------------- ( -39.20) >DroAna_CAF1 76645 103 + 1 -----------CCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCUUUCCAGACAAGUGAAAACUUGAUAAACUGGGUCAGCCAGC---UCGAUGGCUUGGGGAGGUGACACAGGC -----------((((((((((..(..(((((...))))).((((....(((((.(((((....))))).....)))))...))))).---.)))).))))))...(....)...... ( -35.60) >consensus ___________CCAAGUAUUGUCCUCGUGGCCAGGCCACUUGGCGCAUUCCAGACAAGUGAAAACUUGACAAACUGGGUCAGCCCAAAA_GGGGCGGAUUGGGG_____________ ...........((((...((((((..(((((...)))))..(((....(((((.(((((....))))).....)))))...))).......)))))).))))............... (-25.27 = -27.38 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:50 2006