| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,213,582 – 25,213,686 |
| Length | 104 |
| Max. P | 0.980597 |
| Location | 25,213,582 – 25,213,686 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.29 |
| Mean single sequence MFE | -24.34 |
| Consensus MFE | -10.28 |
| Energy contribution | -12.20 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.42 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25213582 104 - 27905053 ACGCCGAUCGCUUGAUUGGUUCUCUUCUGAUUCUGAUACUGAUUCAGAUUCAGAUUCCGAUUUUUCGCCUGCAAUGCAACGUGGCGAAUAAUCAAAUUUGAUUC ..(((((((....))))))).....(((((.(((((.......))))).)))))....((((.((((((.((........)))))))).))))........... ( -33.00) >DroSec_CAF1 71960 92 - 1 ACACCGAUGGCUUGAUUGGUUCUCUUCUGACUC------------UGAUUCAGAUUCAGAUUUUUCGCCUGCAAUGCAACGUGGCGAAUAAUCAAAUUUGAUUC ..((((((......)))))).....(((((.((------------((...)))).)))))...((((((.((........)))))))).(((((....))))). ( -22.70) >DroSim_CAF1 72068 104 - 1 ACGCCGAUCGCUUGAUUGGUUCUCUUCUGAUUCAGAUUCUGAUUCAGAUUCAGAUUCAGAUUUUUCGCCUGCAAUGCAACGUGGCGAAUAAUCAAAUUUGAUUC ..(((((((....))))))).....(((((.((((...)))).))))).(((((((..((((.((((((.((........)))))))).)))).)))))))... ( -33.50) >DroEre_CAF1 75053 80 - 1 ACGCCGAUCGCUUGAUUGGUUCUCUUCUGAU------------------------UCAGAUGUUUCCCCAGCAAUGCAACGUGGCGAAUAAUCAAAUUCGAUUC .(((((...(((((.((((......((((..------------------------.)))).......))))))).))....)))))...((((......)))). ( -17.12) >DroYak_CAF1 74960 80 - 1 ACGCCGAUCGCUUGAUUGGUUCUCUUCUGAU------------------------UCAGAUAUUUCGCCUGCAAUGCAACGUGGCGAAUAAUCAAAUUUGAUUC ..(((((((....)))))))........((.------------------------((((((..((((((.((........)))))))).......)))))).)) ( -18.90) >DroPer_CAF1 78373 102 - 1 ACUCUUAACGCUUGAUUGGUUACAGUUU--UUCAGUUUGCAGUUUGGCCUCCACUCCACUCCACUGCACUGCACUGAAUCGUAACAAAUAAUCAAAUUUUAUUC ...........((((((((((((.(...--((((((.((((((.(((........)))....))))))....)))))).))))))...)))))))......... ( -20.80) >consensus ACGCCGAUCGCUUGAUUGGUUCUCUUCUGAUUC_____________GAUUCAGAUUCAGAUUUUUCGCCUGCAAUGCAACGUGGCGAAUAAUCAAAUUUGAUUC ..(((((((....)))))))......................................(((..((((((.((........))))))))..)))........... (-10.28 = -12.20 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:48 2006