| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,196,720 – 25,196,812 |
| Length | 92 |
| Max. P | 0.975794 |
| Location | 25,196,720 – 25,196,812 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -9.61 |
| Energy contribution | -10.41 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.975794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25196720 92 + 27905053 CGAGUGU----GUGUGAGUUUU--AAGGCGACACACACUAAAAGCCCGGCCCCGUUAUCC-CGCCUGCACUCGCACACACACACACAAGC--ACAAGUACA ...((((----((((((((...--.(((((.......(.....)..((....))......-)))))..))))))))))))..........--......... ( -27.70) >DroSec_CAF1 55889 88 + 1 AGAGUGU----GUGUGAGUUUU--AAGGCGACACACACUAAAAGCCCGGUUCCGUUAUCC-CGCCUGCACUCGCACACACACACACA------CAAGUGCA ...((((----((((((((...--.(((((.......(.....)..((....))......-)))))..)))))))))))).(((...------...))).. ( -29.00) >DroSim_CAF1 55295 98 + 1 CGAGUGUGUGUGUGUGAGUUUU--AAGGCGACACACACUAAAAGCCCGGUCCCGUUAUCC-CGCCUGCACUCGCACACACACACACACACAAACAAGUGCA ...((((((((((((((((...--.(((((.......(.....)..((....))......-)))))..))))))))))))))))...(((......))).. ( -37.60) >DroEre_CAF1 58435 76 + 1 UGAGUGU----G------UUUU--AAGGCGACACACACUAAAAGCCCGGUCCCGUUAUCC-CGCCUGCACUCUCACA--------CA--C--ACCAGUACA ((((.((----(------(...--.(((((.......(.....)..((....))......-))))))))).))))..--------..--.--......... ( -14.70) >DroAna_CAF1 53034 85 + 1 UGAGUGU----G------UUUUGGAAGGCGACACAUACUAAAAGCCCGCACCCCU-AUCCCUGGCAUCCCUGGCAUUCCCCUGCCCC-----CCACGUGCA ..(((((----(------(.(((.....))).)))))))........((((.((.-......)).......((((......))))..-----....)))). ( -19.20) >consensus CGAGUGU____GUGUGAGUUUU__AAGGCGACACACACUAAAAGCCCGGUCCCGUUAUCC_CGCCUGCACUCGCACACACACACACA__C__ACAAGUGCA .((((((...................(((..............))).(((............))).))))))((((....................)))). ( -9.61 = -10.41 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:43 2006