Locus 9536

Sequence ID	3R_DroMel_CAF1
Location	25,195,875 – 25,195,965
Length	90
Max. P	0.872326

overview

Window 3

Location	25,195,875 – 25,195,965
Length	90
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	93.55
Mean single sequence MFE	-28.48
Consensus MFE	-24.10
Energy contribution	-24.10
Covariance contribution	-0.00
Combinations/Pair	1.09
Mean z-score	-1.57
Structure conservation index	0.85
SVM decision value	0.88
SVM RNA-class probability	0.872326
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25195875 90 + 27905053
UGCCGUUGACUGACAGCUGGAAAAGUGGGCUGGGAAAAUGGGUGUCAGUUCUACGGGCUAAAUGGGCUUGCGGAGCGUGAGCGGAAGUGG---
..(((((.(((((((.(((....((....)).......))).)))))((((..((((((.....))))))..)))))).)))))......--- ( -30.50)
>DroSec_CAF1 55088 89 + 1
UGCCGUUGACUGACAGCUGGAAAAGUGGGCUGGGAAAAUGGGAGUCGGUUCUACGGGCUAAAUGGGC-UGCGGAGCGUGAGCGGAAGUGG---
..(((((.((...(((((.(.....).)))))...............((((..(((.((....)).)-))..)))))).)))))......--- ( -27.60)
>DroSim_CAF1 54482 89 + 1
UGCCGUUGACUGACAGCUGGAAAAGUGGGCUGGGAAAAUGGGAGUCGGUUCUACGGGCUAAAUGGGC-UGCGGAGCGUGAGCGGAAGUGG---
..(((((.((...(((((.(.....).)))))...............((((..(((.((....)).)-))..)))))).)))))......--- ( -27.60)
>DroEre_CAF1 57572 92 + 1
UGCCGUUGACUGACAGCUGGAAAAGUGGGCUGGGAAAAUGGGUGCCAGUUCUACGGGCUAAAUGGGC-UGCGGAGCGUGGGCGGAAGUGGAUG
...((((.(((..(((((.(.....).)))))..........((((.((((..(((.((....)).)-))..))))...))))..))).)))) ( -29.40)
>DroYak_CAF1 56976 92 + 1
UGCCGCUGACUGACAGCUGGAAAAGUGGGCUGGGAAAAUGGGAGCCAGUUCUACGGACUAAAUGGGC-UGCGUAGCGUGGGCGGAAGUGGAAG
..(((((.((...(((((.(.....).)))))........(.((((((((.....)))).....)))-).).....)).)))))......... ( -27.30)
>consensus
UGCCGUUGACUGACAGCUGGAAAAGUGGGCUGGGAAAAUGGGAGUCAGUUCUACGGGCUAAAUGGGC_UGCGGAGCGUGAGCGGAAGUGG___
..(((((.((...(((((.(.....).)))))...............((((..((.(((.....))).))..)))))).)))))......... (-24.10 = -24.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:39 2006