Locus 9534

Sequence ID 3R_DroMel_CAF1
Location 25,192,363 – 25,192,453
Length 90
Max. P 0.781773
window15251

overview

Window 1

Location 25,192,363 – 25,192,453
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 77.56
Mean single sequence MFE -20.92
Consensus MFE -19.32
Energy contribution -18.96
Covariance contribution -0.36
Combinations/Pair 1.15
Mean z-score -0.88
Structure conservation index 0.92
SVM decision value 0.56
SVM RNA-class probability 0.781773
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25192363 90 - 27905053
AUUUGUCUGGCUGGAGAUGCCAAAAUGGCUGCUCGUCUUUGGCUCCGCCCCCUUGCCAUCCAAAAAACCCCUUCCCUUAC------CCACAGGAUC
.((((..((((.((.(..((((((..(((.....)))))))))....).))...))))..))))..........(((...------....)))... ( -20.60)
>DroSec_CAF1 51603 95 - 1
AUUUGUCUGGCUGGAGAUGCCAAAAUGGCUGCUCGUCUUUGGCUCCGCCCCCUUGCCACCCAGAAACCCCUCUCCCAC-CCUCCAACUCCAGGAUA
.....(((((.(((((..(((.....)))......(((.((((...........))))...)))..............-.)))))...)))))... ( -22.00)
>DroSim_CAF1 50961 96 - 1
AUUUGUCUGGCUGGAGAUGCCAAAAUGGCUGCUCGUCUUUGGCUCCGCCCCCUUGCCACCCAGAAACCCCUCUCCCUCCCCUCCAACUCCAGGAUA
.....(((((.(((((..(((.....)))......(((.((((...........))))...)))................)))))...)))))... ( -22.00)
>DroEre_CAF1 51409 76 - 1
AUUUGUCUGGCUGGAGAUGCCAAAAUGGCUACUCGUCCUUGGCACCGCCCCCUUGCCACCCAGAA----U--------CCCC--------CGAAUC
.((((..((((.((.(.((((((...(((.....))).)))))).)..))....))))..)))).----.--------....--------...... ( -20.00)
>DroYak_CAF1 53230 80 - 1
AUUUGUCUGGCUGGAGAUGCCGAAAUGGCUGCUCGUCUUUGGCACCGCCCCCUUGCCGCCCAAAUCGCCC--------CCCU--------CGAAUU
(((((..((((.((.(.(((((((..(((.....)))))))))).)..))....))))..))))).....--------....--------...... ( -20.00)
>consensus
AUUUGUCUGGCUGGAGAUGCCAAAAUGGCUGCUCGUCUUUGGCUCCGCCCCCUUGCCACCCAGAAACCCC__UCCC__CCCU____C__CAGGAUA
.((((..((((.((.(..((((((..(((.....)))))))))....).))...))))..))))................................ (-19.32 = -18.96 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:38 2006