Locus 9533

Sequence ID 3R_DroMel_CAF1
Location 25,191,231 – 25,191,346
Length 115
Max. P 0.881990
window15250

overview

Window 0

Location 25,191,231 – 25,191,346
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.96
Mean single sequence MFE -21.77
Consensus MFE -3.16
Energy contribution -5.36
Covariance contribution 2.20
Combinations/Pair 1.12
Mean z-score -1.83
Structure conservation index 0.15
SVM decision value 0.92
SVM RNA-class probability 0.881990
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25191231 115 + 27905053
CAGAAAGGUAAAUUCACAACAGAAGCCUAAAACAACUUAUU-----UGUGAUUUCAAAGCGUUGUUUUGCUCCGAAAGGUUUUUCAUUUAAUUCAGCUAAAUCUGUUUACACCUUUCUCG
.((((((((........(((((((((.(((((((((...((-----((......))))..)))))))))..((....))................)))...))))))...)))))))).. ( -27.60)
>DroSec_CAF1 50519 108 + 1
CAGAAAGGUAAAUUCACAACAGAAGCCUAAAACAACUUACU--------AAUUUCA-AGCGUUGU--UGCCCCAAAAGGUUUUUCAUUUAAUCCAGCUCAAUCUGUUUACACCUUUCUC-
.((((((((........(((((((((....((((((.....--------.......-...)))))--)(((......)))...............)))...))))))...)))))))).- ( -19.16)
>DroSim_CAF1 49852 112 + 1
CAGAAAGGUAAGUUCACAACAGAAGCCUAAAACAACUUGCU-----UGUGAUUUCAAAGCGUUGU--UGCUCCAAAAGGUUUUUCAUUUAAUCCAGCUCAAUCUGUUUACACCUUUCUC-
.((((((((..((....(((((((((....((((((..(((-----(.((....)))))))))))--).........((((........))))..)))...)))))).)))))))))).- ( -24.20)
>DroEre_CAF1 50295 104 + 1
CAGAAAGGUAAGUACACAACAGCAGGCUAAAAUAACUUAUAAAACAUGGCAUUUA---GCGCUAG--UCCUCUGAAAGGUUUUUCUCUCAAUCCAGCG----------ACUGCCUUUUU-
.((((((((...........(((..((((((....(...........)...))))---)))))((--((((.(((.(((....))).)))....)).)----------)))))))))))- ( -18.00)
>DroYak_CAF1 52082 117 + 1
CAGUAAGGUAAAUACACAACAAAAGCCUAAAAUAACUUAUCAAACAUGGCAUUUACUUGCGUUAG--UUCUCUUAAACGUUUUUCAGUAAAUCCAGCUAAAACUGUGUACUGCUUUCUU-
.((.((((((..((((((.....(((.(((......))).......(((.(((((((.(((((((--....))..))))).....))))))))))))).....)))))).)))))))).- ( -19.90)
>consensus
CAGAAAGGUAAAUUCACAACAGAAGCCUAAAACAACUUAUU_____UGGCAUUUCA_AGCGUUGU__UGCUCCAAAAGGUUUUUCAUUUAAUCCAGCUAAAUCUGUUUACACCUUUCUC_
.((((((((...........((((((((...(((((........................)))))...........)))))))).........(((......))).....)))))))).. ( -3.16 =  -5.36 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:37 2006