Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,190,745 – 25,190,836 |
Length | 91 |
Max. P | 0.532042 |
Location | 25,190,745 – 25,190,836 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 82.95 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -15.79 |
Energy contribution | -15.76 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.12 |
Mean z-score | -1.46 |
Structure conservation index | 0.74 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25190745 91 + 27905053 AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAAAAAACUAACAGCCAUGGCAAGGACAUGGCGCCAAGCCAGCUGCUCCAGCU------ ...(((((((.((.......(((((..((...-.)).)))))..........((((((.......)))))).....))))))))).......------ ( -27.20) >DroVir_CAF1 70902 91 + 1 AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCACAAGGAUUAAAAAACUAACAGCCAUGGCAGGGACAUG-CGCUCAGCCAGCUGCUGUUCCU------ ...(((((((.((..............((((.((.((.(((......)))...)).))))))(..(...-.)..).))))))))).......------ ( -23.90) >DroPse_CAF1 54022 93 + 1 AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAAAAAACUAACAGCCAUGGCAAGGAA----GGACAAGCCGGUUGCUACUGGCCCUGCC ..(((.((((((((.(((......))).))).-.((..........)).)))))....))).((.(----((....((((((....))))))))).)) ( -21.80) >DroGri_CAF1 152524 91 + 1 AAUGCAGCUGUGCGACUAAAUUAAUAACUGCAAAAGGAUUAAAAAACUAACAGCCAUGGCAAGGACAUG-CGCUCAACCAGCUGCUACUGCU------ ...(((((((((((..((......))..))))...................(((((((.......))))-.)))....))))))).......------ ( -20.50) >DroWil_CAF1 130570 88 + 1 AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAA-AAACUAACUACCAUGGCAAGGACAUUG-ACUAAGCCAUCUGCUGGA-CU------ ...((((((.((((.(((......))).))))-.))......-............(((((.((.......-.))..)))))))))....-..------ ( -14.40) >DroPer_CAF1 55012 93 + 1 AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAAAAAACUAACAGCCAUGGCAAGGAA----GGACAAGCCGGCUGCUACUGGCCCUGCC ...((((((.((((.(((......))).))))-.))................(((((((((..(..----((.....))..)))))).)))).)))). ( -20.60) >consensus AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA_AAGGAUUAAAAAACUAACAGCCAUGGCAAGGACAUG_CGCCAAGCCAGCUGCUACUGCU______ ...(((((((.((...............(((....((.(((......)))...))...)))...............)))))))))............. (-15.79 = -15.76 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:36 2006