Locus 9531

Sequence ID 3R_DroMel_CAF1
Location 25,188,167 – 25,188,260
Length 93
Max. P 0.646966
window15248

overview

Window 8

Location 25,188,167 – 25,188,260
Length 93
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 80.34
Mean single sequence MFE -26.61
Consensus MFE -20.20
Energy contribution -19.78
Covariance contribution -0.41
Combinations/Pair 1.24
Mean z-score -1.25
Structure conservation index 0.76
SVM decision value 0.24
SVM RNA-class probability 0.646966
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25188167 93 + 27905053
CACACUAU------CGC-AAAUGUCUGUUGCUCACUUUGCCGUUAAGCUGACAAUGACAGAAAUGGCAAUUUUAUUGGCAGGCUCCGGCUAAAUGGCCAC
........------...-....(((((((.......((((((((...(((.......))).)))))))).......)))))))...((((....)))).. ( -25.04)
>DroVir_CAF1 66828 89 + 1
CGUAC----------UC-UGGCAUUCGUUGUUCACUUGGCUGUUAAGCUGACAAUGACAGCAAUGGCUAUUUUAUUGGCAGGCACUGGCAAAAUGGCCAC
.....----------..-..((..((((((((.....((((....))))))))))))..))..(((((((((...((.(((...))).))))))))))). ( -26.50)
>DroGri_CAF1 147907 99 + 1
CAUGCAGCUGUAGGCAC-UGGCGUCUGUUGCUCACUUUGCCGUUAAGCUGACAAUGACAGCAACGACAAUUUUAUUGGCAGGCACUGGCAAAAUGGCCAC
(((.(((((...((((.-(((((.....))).))...))))....)))))...)))...((.....((((...))))....))..((((......)))). ( -25.60)
>DroWil_CAF1 128092 92 + 1
CAUACAA--------ACAGAUGUUCUGUUGCUCACUUUGCCGUUAAGCUGACAAUGACAGCAAUGGCAAUUUUAUUGGCAGGCUCUGGCUAAAUGGCCAC
......(--------((((.....)))))(((....((((((((..((((.......)))))))))))).......)))......(((((....))))). ( -25.50)
>DroMoj_CAF1 59852 99 + 1
CAUACACGUGUGGAGCG-AGGCAUUUGUUGUUCACUUUGCCGUUAAGCUGACAAUGACAGCGAUGGCAAUUUUAUUGGCAGUCACUGGCCAAAUGGCCAU
.........((((((((-(.(....).))))))...((((((((..((((.......)))))))))))).............)))(((((....))))). ( -29.30)
>DroAna_CAF1 44796 94 + 1
CACACGAA-----GGAC-AAUUGUCUGUUGCUCACUUUGCCGUUAAGCUGACAAUGACAGCAAUGGCAAUUUUAUUGGCAGGCUCUGGCUAAAUGGCCAC
....(...-----.)..-....(((((((.......((((((((..((((.......)))))))))))).......)))))))..(((((....))))). ( -27.74)
>consensus
CAUACAA________AC_AAGCGUCUGUUGCUCACUUUGCCGUUAAGCUGACAAUGACAGCAAUGGCAAUUUUAUUGGCAGGCACUGGCUAAAUGGCCAC
........................((((((......((((((((..((((.......))))))))))))......)))))).....(((......))).. (-20.20 = -19.78 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:35 2006