Locus 9530

Sequence ID 3R_DroMel_CAF1
Location 25,186,140 – 25,186,231
Length 91
Max. P 0.950915
window15247

overview

Window 7

Location 25,186,140 – 25,186,231
Length 91
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.76
Mean single sequence MFE -29.87
Consensus MFE -19.24
Energy contribution -20.68
Covariance contribution 1.45
Combinations/Pair 1.10
Mean z-score -2.13
Structure conservation index 0.64
SVM decision value 1.41
SVM RNA-class probability 0.950915
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25186140 91 + 27905053
-------------UACCAUUAUACACCUUAUUUUCGCACAGUGCACUCACAUGAAG-GGGCAAAAACGCAUCGAGGCGUUGACAGC---GACGAGAGUGGGGUUAUAA
-------------.....(((((.(((((((((((((.(..(((.(((.......)-)))))..(((((......)))))....).---).))))))))))))))))) ( -26.70)
>DroSec_CAF1 44468 95 + 1
-------------UACCAUUAUACACCCUAUUUUCGCACAGUGCUCUCACAUGAAGAGGGCUAAAACGCAUCGAGGCGUUGACAGCGUCGACGAGAGUGGGGUUAUAA
-------------.....(((((.(((((((((((((.....((((((.......))))))......)).((((.((.......)).)))).)))))))))))))))) ( -35.40)
>DroSim_CAF1 44840 108 + 1
UACCAUACCAUGUUACCAUUAUAACCCCUAUUUUCGCACAGUGAACUCACAUGAAGAGGGCUAAAACGCAUCGAGGCGUUGACAGCGUCGACGAGAGUGGGGUUAUAA
..................((((((((((.((((((((((.(((....))).........(((..(((((......)))))...))))).).))))))))))))))))) ( -34.10)
>DroEre_CAF1 45336 94 + 1
-------------UACCAUU-UACACCUCAUUUUCGCGCAGUGCGCUCACAUGAAGAGGGCAAAAACGCACAGAGGCGUUGACAGCGUAGACGAGAGUGGGGUUAUAA
-------------.......-...(((((((((((((((..(((.(((.......))).)))..(((((......)))))....)))....))))))))))))..... ( -32.50)
>DroYak_CAF1 46955 94 + 1
-------------UACCAAU-UACACCUCAUUUUCGCUCAGUGCGCUCACAUGAAGAGGGCCAAAACGCAUCGAGGCGUUGACAGCGUCGACGAGAGUGGGGUUAUAA
-------------.......-...((((((((((((.((..(((((((.(.....).))))...(((((......)))))....)))..))))))))))))))..... ( -31.70)
>DroAna_CAF1 42922 80 + 1
---------------------UGCACAUUUUUUC----CACUGCACUCGCAUGCAGAAAGCAUAAACGCAUCGAGGCGUUGACAGC---AACGAGUCCUGGGGUCUCU
---------------------(((..........----..(((((......)))))........(((((......)))))....))---)..(((.((...)).))). ( -18.80)
>consensus
_____________UACCAUU_UACACCUUAUUUUCGCACAGUGCACUCACAUGAAGAGGGCAAAAACGCAUCGAGGCGUUGACAGCGUCGACGAGAGUGGGGUUAUAA
.........................(((((((((((......((.(((.......))).))...(((((......)))))...........)))))))))))...... (-19.24 = -20.68 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:34 2006