Locus 9529

Sequence ID	3R_DroMel_CAF1
Location	25,185,432 – 25,185,534
Length	102
Max. P	0.545539

overview

Window 6

Location	25,185,432 – 25,185,534
Length	102
Sequences	6
Columns	117
Reading direction	reverse
Mean pairwise identity	75.59
Mean single sequence MFE	-26.11
Consensus MFE	-14.18
Energy contribution	-13.87
Covariance contribution	-0.30
Combinations/Pair	1.32
Mean z-score	-1.57
Structure conservation index	0.54
SVM decision value	0.02
SVM RNA-class probability	0.545539
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25185432 102 - 27905053
CAGCGUU----UCCGUUGCCUUUCACC----AAACGGAAGUUGGGCGCACUAAACGAUUUGCUUGUU-----UCGUGUGCUGAAAUAUUU--AGGCAGUCCGAGAAGUCGGAGGUUC
.......----.((.((((((((((((----((.(....)))))((((((.((((((.....)))))-----).))))))))))......--))))))(((((....)))))))... ( -33.40)
>DroPse_CAF1 48891 92 - 1
CAGCGCU----UCCGUUGCCUUUCACC----AAACGGAAGUUGAGCGCACUAAACGAUUUGCUUGUUUCGUUUCGUGUGCUGAAAUAUUU--AAGCAGUCUG---------------
..(((((----((((((..........----.)))))))))(.(((((((.((((((..........)))))).))))))).).......--..))......--------------- ( -30.90)
>DroWil_CAF1 125134 93 - 1
CAGCAUU----UCCGUUGGCUUUCAAC----AAACGGAAGCAAAGUGCACUAAACGAUUUGCUUGUU-----UCGUUUGCUGAAAUAUUU--AAACAGACCAAGAU--CG-------
((((...----...))))..(((((.(----(((((((((((((.((.......)).))))))...)-----))))))).))))).....--..............--..------- ( -19.40)
>DroMoj_CAF1 57190 100 - 1
CAGAGUUUCCUUCCGUUGCCUUUUGCCACAAAAACGGAAGCAAGGCACACUAAACGAUUUGCUUGUC-----UCGUUUGCUGAAGUAUUUUGCAGCCAAUUGAAG------------
.........((((((((...............))))))))...(((.((.(((((((..........-----))))))).))..((.....)).)))........------------ ( -20.16)
>DroAna_CAF1 42166 89 - 1
CAGCGUU----UCCGUUGCCUUUCAGC----AAACGGAAGUAGAGUGCUCUAAACGAUUUGCUUGUU-----UCGUGUACUAAAAUAUUU--AAGCAGACUG-------------UC
..((.((----((((((((......))----.))))))))...(((((.(.((((((.....)))))-----).).))))).........--..))......-------------.. ( -21.90)
>DroPer_CAF1 49863 92 - 1
CAGCGCU----UCCGUUGCCUUUCACC----AAACGGAAGUUGAGCGCACUAAACGAUUUGCUUGUUUCGUUUCGUGUGCUGAAAUAUUU--AAGCAGUCUG---------------
..(((((----((((((..........----.)))))))))(.(((((((.((((((..........)))))).))))))).).......--..))......--------------- ( -30.90)
>consensus
CAGCGUU____UCCGUUGCCUUUCACC____AAACGGAAGUAGAGCGCACUAAACGAUUUGCUUGUU_____UCGUGUGCUGAAAUAUUU__AAGCAGACUG_______________
..(((((....((((((...............)))))).....)))))......((..((((((........(((.....))).........))))))..))............... (-14.18 = -13.87 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:33 2006