Locus 9525

Sequence ID 3R_DroMel_CAF1
Location 25,169,706 – 25,169,796
Length 90
Max. P 0.808804
window15240

overview

Window 0

Location 25,169,706 – 25,169,796
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 88.43
Mean single sequence MFE -27.08
Consensus MFE -23.65
Energy contribution -23.82
Covariance contribution 0.17
Combinations/Pair 1.13
Mean z-score -1.76
Structure conservation index 0.87
SVM decision value 0.64
SVM RNA-class probability 0.808804
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25169706 90 - 27905053
GUGGGCCAGAAGUGCGCACUUGAACUACACGCGUUACCGUUUGCGUUAGCGGCGUGCUUUUAUGGCCAAAACAACGAGGAAAAUCGC----AAA----
((.(((((((((..(((.......(((.(((((........))))))))..)))..))))..)))))...))..(((......))).----...---- ( -29.00)
>DroSec_CAF1 28223 90 - 1
GUGGGCCAAAAGUGCGCACUUGAACUACACACGUUGCCGUUUGCGUUAGCGGCGUGCUUUUAUGGCCAAAACAACGAGGAAAAUCGC----AAA----
((.(((((((((..(((...((.....))..(((((.((....)).))))))))..))))..)))))...))..(((......))).----...---- ( -28.10)
>DroSim_CAF1 28428 90 - 1
GUGGGCCAAAAGUGCGCACUUGAACUACACACGUUGCCGUUUGCGUUAGCGGCGUGCUUUUAUGGCCAAAACAACGAGGAAAAUCGC----AAA----
((.(((((((((..(((...((.....))..(((((.((....)).))))))))..))))..)))))...))..(((......))).----...---- ( -28.10)
>DroEre_CAF1 29099 94 - 1
GUGGGCCAAAAGUGCGCACUUGAACUACACACGUUACCGUUUGCGUUAGCGGCGUGCUUUUAUGGGCAAAACAACGAGGAAAAUCGGGGAAAAA----
((..((((((((..(((...((.....))..(((((.((....)).))))))))..)))))...)))...))..(((......)))........---- ( -25.30)
>DroYak_CAF1 29042 98 - 1
GUGGGCCAAAAGUGCGCACUUGAACUACACACGUUACCGUUUGCGUUAGCGGCGUGCUUUUAUGGCCAAAACAACGAGGAAAAUCGAGGAAAAAAAAA
((.(((((((((..(((...((.....))..(((((.((....)).))))))))..))))..)))))...))..(((......)))............ ( -29.10)
>DroAna_CAF1 25986 81 - 1
GUGGGCUAAAAGUGCGCACUUGAACUACACACGUUA------GUGUUAGCGGCGUGCUUUUAUGGCCAAAAGAAGGAGGGCAA-------AAAA----
.(((.(((((((..(((.......(((.((((....------)))))))..)))..)))))).).)))...............-------....---- ( -22.90)
>consensus
GUGGGCCAAAAGUGCGCACUUGAACUACACACGUUACCGUUUGCGUUAGCGGCGUGCUUUUAUGGCCAAAACAACGAGGAAAAUCGC____AAA____
((.(((((((((..(((...((.....))..(((((.((....)).))))))))..))))..)))))...)).......................... (-23.65 = -23.82 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:28 2006