Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,168,867 – 25,168,964 |
Length | 97 |
Max. P | 0.830077 |
Location | 25,168,867 – 25,168,964 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.83 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -15.70 |
Energy contribution | -15.95 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.79 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25168867 97 - 27905053 AAACCAAACACUAGUGUUGACUGCAAAAAUGG--ACAAAAAGAUGAAAAGGGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC .............(((((...(((((...((.--.((.((((.(((...((((.....)))).....))).)))).)).)).))))).....))))).. ( -24.70) >DroSec_CAF1 27434 90 - 1 AAACAAAACACCAGUGUUGACUGCAAAAAUGG--ACAAAAAGA-------AGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC ..........(((...(((....)))...)))--.........-------.(((.....)))........(((((.((((....)).)).))))).... ( -17.60) >DroSim_CAF1 27599 90 - 1 AAACAAAACACCAGUGUUGACUGCAAAAAUGG--ACAAAAAGA-------AGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC ..........(((...(((....)))...)))--.........-------.(((.....)))........(((((.((((....)).)).))))).... ( -17.60) >DroYak_CAF1 28215 92 - 1 AAACAAAACACUAGUGUUGACUGCAAAAAUGAAGAAAAAAAGA-------AGGAUACACCCCGAGUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC .............((((.((((((....((((((.........-------..(((((.......)))))..)))))).))))))))))........... ( -19.32) >consensus AAACAAAACACCAGUGUUGACUGCAAAAAUGG__ACAAAAAGA_______AGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC ......((((....))))....((...........................(((.....)))........(((((.((((....)).)).))))))).. (-15.70 = -15.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:27 2006