| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,158,538 – 25,158,638 |
| Length | 100 |
| Max. P | 0.956610 |
| Location | 25,158,538 – 25,158,638 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 73.88 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -21.55 |
| Energy contribution | -23.88 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25158538 100 + 27905053 -------------------CCCAUUCCCAACGCAUUUUUGUAGGCAGGCGCCAGUCGGUGUUCUUUGGGAUUUCCUUUGCCUGUUUAUGGCUGCGAUUUGUUACGCACAAUGGUGCGUG -------------------...........((((...(..((((((((((((....))).......(((....)))..)))))))))..).))))......(((((((....))))))) ( -33.50) >DroSec_CAF1 17333 101 + 1 ------------------CCCCAUUACCAUCGCAUUUUUGUAGGCAGGCGCCAGUCGGUGUUCUUUGGGAUUUCCUUUGCCUGUUUAUGGCUGCGAUUUGUUACGCACAAUGGUGCGUG ------------------..........((((((...(..((((((((((((....))).......(((....)))..)))))))))..).))))))....(((((((....))))))) ( -35.30) >DroEre_CAF1 18301 99 + 1 --------------------CCAUUCCCAGCGCAUUUUUGUAGGCAGGCGCCAGUCGGUGUUCUUUGGGAUUUCCUUUGCCUGUUUAUGGCUGCGAUUUGUUACGCACAAUGGUGCGUG --------------------..........((((...(..((((((((((((....))).......(((....)))..)))))))))..).))))......(((((((....))))))) ( -33.20) >DroWil_CAF1 92267 80 + 1 ---------------------CCUGCCCAAUCCCCAACCA------------ACUGAGUGUUGUU------GCUCUUUGGCUGUUUAUGGCUACGAUUUGUUACGCACCAUUGUGCGUG ---------------------...(((.......((.(((------------(..((((......------)))).)))).)).....)))..........(((((((....))))))) ( -19.90) >DroYak_CAF1 17496 119 + 1 UUCCCAACUUCUCCUCCCCUUCAUUCGCAUCGCAUUUUUGUAGGCAGGCGCCAGUCGGUGUUCUUUGGGAUUUCCUUUGCCUGUUUAUGGCUGCGAUUUGUUACGCACAAUGGUGCGUG .........................((.((((((...(..((((((((((((....))).......(((....)))..)))))))))..).)))))).)).(((((((....))))))) ( -35.80) >DroAna_CAF1 15652 99 + 1 ---------------CC---CCUUCCUGAUCCCGAAUCCGUAGGCAGGCGCCAG--GAUAUUCUGGGGGAUUGCCGUUGCCUGUUUAUGGCUGCGAUUUGUUACGCACAAUGGUGCGUG ---------------..---............((...((((((((((((.((((--(....)))))((.....))...))))))))))))...))......(((((((....))))))) ( -36.70) >consensus ____________________CCAUUCCCAUCGCAUUUUUGUAGGCAGGCGCCAGUCGGUGUUCUUUGGGAUUUCCUUUGCCUGUUUAUGGCUGCGAUUUGUUACGCACAAUGGUGCGUG ..............................((((...(((((((((((((((....)))........((....))...)))))))))))).))))......(((((((....))))))) (-21.55 = -23.88 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:22 2006