Locus 9519

Sequence ID 3R_DroMel_CAF1
Location 25,157,834 – 25,157,928
Length 94
Max. P 0.568599
window15232

overview

Window 2

Location 25,157,834 – 25,157,928
Length 94
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 70.68
Mean single sequence MFE -26.42
Consensus MFE -12.67
Energy contribution -13.92
Covariance contribution 1.25
Combinations/Pair 1.26
Mean z-score -1.58
Structure conservation index 0.48
SVM decision value 0.07
SVM RNA-class probability 0.568599
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25157834 94 + 27905053
------GCCG--A--GCGGCUUUUGCUGGUUUUGUUUGGCUGAGAUUUCUGAAGUCUGAUGCCAGUUGUGGUGACAGCUAAAGUGGUGUUUCAACCAAAUAAAU
------(((.--(--(((.....)))))))(((((((((.((((((..((..((.(((.(((((....))))).)))))..))....)))))).))))))))). ( -28.50)
>DroPse_CAF1 17545 96 + 1
GCUAUAGCUGUGGCCGUAGCUGUUGCUGGUUU----UGGCUGAUGUUUUA----GCUGAUGUUUCUGGUGGUGACAGUUAAAGUGGCUUUGCAUCGCCGGAAAC
((((.(((...(((((.((((......)))).----)))))...))).))----))....(((((((((((((..((((.....))))...))))))))))))) ( -36.80)
>DroSec_CAF1 16658 94 + 1
------GCUG--A--GCGGCUUUUGCUGGUUUUGUUUGGCUGAGAUUUCUGAAGUCUGAUGCCAGUUGUGGUGACAGCUAAAGUGUUGUUUCAACCAAAUAAAU
------....--.--.((((....))))..(((((((((.((((((..((..((.(((.(((((....))))).)))))..))....)))))).))))))))). ( -28.30)
>DroSim_CAF1 16314 94 + 1
------GCUG--A--GCGGCUUUUGCUGGUUUUGUUUGGCUGAGAUUUCUGAGAUCUGAUGCCAGUUGUGGUGACAGCUAAAGUGNNNNNNNNNNNNNNNNNNN
------((((--.--((.((....((((((...(((.((((.((....)).)).)).))))))))).)).))..)))).......................... ( -21.60)
>DroEre_CAF1 17627 80 + 1
------------------------GCUGGUUUUGUUUGGCUGAGAUGUCUAAAGUCUGAUGCCAGUGGUGAUGACAGUUAAAGUGGUGCUCCGACCAAAUAAAU
------------------------......((((((((((.(((..(((........)))((((.(..((((....)))).).)))).))).).))))))))). ( -18.40)
>DroYak_CAF1 16803 94 + 1
------GCUG--A--GCGACUUUUGCUGGUUUUGUUUGGCUGAGAUGUCUGAAGUCCGAUGCCAGUGGUGGUGACAGUUAAAGUGGUGUUCCAACCAAAUAAAU
------((((--.--((.(((...((((((.(((...((((.((....))..))))))).))))))))).))..)))).....((((......))))....... ( -24.90)
>consensus
______GCUG__A__GCGGCUUUUGCUGGUUUUGUUUGGCUGAGAUUUCUGAAGUCUGAUGCCAGUGGUGGUGACAGCUAAAGUGGUGUUCCAACCAAAUAAAU
..................(((((.((((.......((((((.((((.......)))).).))))).........)))).))))).................... (-12.67 = -13.92 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:21 2006