Locus 9518

Sequence ID 3R_DroMel_CAF1
Location 25,156,031 – 25,156,131
Length 100
Max. P 0.515995
window15231

overview

Window 1

Location 25,156,031 – 25,156,131
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.41
Mean single sequence MFE -25.13
Consensus MFE -24.17
Energy contribution -24.17
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.96
SVM decision value -0.03
SVM RNA-class probability 0.515995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25156031 100 + 27905053
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUAGUGUUGGCCAGCCGACCGUGCAAAGCCCCCU-ACUCCCCCCCCCUCCGCCGCAACC--CUCUUAA
((((((...((((((((((((((.....)))))((((.((....)).))))....))).))))))....-................))))))..--....... ( -26.40)
>DroSec_CAF1 14862 82 + 1
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUAGUGUUGGCCAGCCGACCGUGCAAAGCCC---------CCUUCCC----------CC--CUCUUAA
..((((.((((((.....(((((.....)))))(((((....))))))))))))))).........---------.......----------..--....... ( -24.10)
>DroSim_CAF1 14518 86 + 1
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUAGUGUUGGCCAGCCGACCGUGCAAAGCCCC-----UCCCCCUCCC----------CC--CUCUUAA
....(((..((((((((((((((.....)))))((((.((....)).))))....))).))))))..-----))).......----------..--....... ( -24.50)
>DroEre_CAF1 15847 87 + 1
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUAGUGUUGGCCAGCCGACCGUGCAAAGUCCCCC-ACCA---CUCGC----------CC--CUCCUAA
..((((.((((((.....(((((.....)))))(((((....)))))))))))))))............-....---.....----------..--....... ( -24.10)
>DroYak_CAF1 14999 90 + 1
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUAGUGUUGGCCAGCCGACCGUGCAAAGCCCCCCUACUA---CUCCC----------CCCGCUCUCAA
..((((.((((((.....(((((.....)))))(((((....))))))))))))))).................---.....----------........... ( -24.10)
>DroAna_CAF1 13610 82 + 1
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUACCGUUGGCCAGCCGACCGUGCAACUGCC---------ACGGCCC----------CC--CUCCUCA
.((.(((((((((.....(((((.....)))))(((((....)))))))))))((((((....).)---------))))...----------..--.))).)) ( -27.60)
>consensus
UUGCGGAUCGGCUUUCGCGUAAUUAAAAAUUGCGGCUAGUGUUGGCCAGCCGACCGUGCAAAGCCCC_____U__CCCUCCC__________CC__CUCUUAA
..((((.((((((.....(((((.....)))))(((((....))))))))))))))).............................................. (-24.17 = -24.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:20 2006