Locus 9517

Sequence ID 3R_DroMel_CAF1
Location 25,149,202 – 25,149,299
Length 97
Max. P 0.815603
window15230

overview

Window 0

Location 25,149,202 – 25,149,299
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.06
Mean single sequence MFE -29.47
Consensus MFE -16.36
Energy contribution -17.33
Covariance contribution 0.97
Combinations/Pair 1.16
Mean z-score -2.12
Structure conservation index 0.56
SVM decision value 0.66
SVM RNA-class probability 0.815603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25149202 97 - 27905053
AG----------UCGGCGCCAUUGGCCACGUCA--------AUUGAAU-----GGUAGGCGGAAAGGCGAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCGGUUUU
..----------..(((.....(((((.((((.--------(((....-----))).))))..((.((....)).)))))))...)))..(((((.(((((.........)))))))))) ( -24.00)
>DroVir_CAF1 7643 103 - 1
AU----------CUGGCGCCGA-GGCCGGGGCUAGGAUAC-GUUGAAU-----GGUAGGCGCAACGCCCAAAGUGUUGGCCAUAAGUCAGCAAACAUGAAUAACAAAUCAAUUCAGUUUC
.(----------(((((.(((.-...))).))))))....-(((((..-----.((.(((.((((((.....)))))))))))...)))))((((.(((((.........))))))))). ( -35.60)
>DroGri_CAF1 88291 100 - 1
AC----------GUGGCGCCA-----CAGAGCAGAUAUACUGUUGAAU-----GGUAGGCGCAACACCAAAAGUGUUGGCCAUAAGUCAGCAAACAUGAAUAACAAAUCAAUUCAGUUUU
..----------.((((((((-----...(((((.....)))))...)-----))).(((.((((((.....)))))))))....))))..((((.(((((.........))))))))). ( -27.50)
>DroWil_CAF1 82136 106 - 1
AGUAACGGAAUUCUGGCGCCAG-GGCCACAUCA--------AUUGAAU-----GGUAGGCGCAACGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUC
..........(((((((.....-.((((..((.--------...)).)-----))).(((.((((((.....)))))))))....)))))))(((.(((((.........)))))))).. ( -27.40)
>DroMoj_CAF1 7112 103 - 1
AG----------CUGGCGCCGA-GGCCAGGUCCUGGUUAC-GUUGAAU-----GGUAGGCGCAACGCCCAAAGUGUUGGCCAUAAGUCAGCAAACAUGAAUAACAAAUCAAUUCAGUUUU
.(----------(((((..((.-.(((((...)))))..)-)......-----....(((.((((((.....)))))))))....))))))((((.(((((.........))))))))). ( -33.50)
>DroPer_CAF1 9388 101 - 1
GA----------CGGGCGCCAG-GGCCACGUCA--------AUUGAAUAGGUAGGUAGGCGCAGAGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUU
((----------(((((.....-.))).))))(--------(((((((.(((..((.(((.....)))....((.(((((.....)))))...)).......))..))).)))))))).. ( -28.80)
>consensus
AG__________CUGGCGCCAA_GGCCACGUCA________AUUGAAU_____GGUAGGCGCAACGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUU
............(((((((.....))...............................(((.((((((.....)))))))))....))))).((((.(((((.........))))))))). (-16.36 = -17.33 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:19 2006