Locus 9514

Sequence ID 3R_DroMel_CAF1
Location 25,148,330 – 25,148,430
Length 100
Max. P 0.548074
window15226

overview

Window 6

Location 25,148,330 – 25,148,430
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.07
Mean single sequence MFE -20.25
Consensus MFE -14.23
Energy contribution -14.28
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -1.27
Structure conservation index 0.70
SVM decision value 0.03
SVM RNA-class probability 0.548074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25148330 100 + 27905053
-AAACAUAUGAAGGAAGCGCCGCUACAAGCGCACGAGUUCAACUUAGUGUGUACUUAACUUCCGUUACAUGGCCGCCA--CUUCACCUACAC----------------AC-CUCACUCAC
-.......(((((...((((((......(((((((((.....))).))))))...((((....))))..))).)))..--))))).......----------------..-......... ( -21.30)
>DroGri_CAF1 87408 104 + 1
AAAACAUAUGAAGGAAACGUUGCUACAAGCGCAUGAGCUCAACUUAGUGUGUACUUAACUUCCGUUACAUGAACGCCAUGCUGCACUUACAC----------------ACUCAAAGUCAC
........(((.(....)((((.....(((......)))))))..((((((((..((((....))))((((.....)))).......)))))----------------))).....))). ( -18.60)
>DroEre_CAF1 8164 116 + 1
-AAACAUAUGAAGGAAGCGCCGCUACAAGCGCACGAGUUCAACUUAGUGUGUACUUAACUUCCGUUACAUGGCCGCCA--CUACACCUACACACCUACACACCUACACAC-CUCACUCAC
-.......((.(((..((((........))))..............(((((((..((((....))))..(((...)))--.......))))))).......))).))...-......... ( -19.20)
>DroWil_CAF1 81373 89 + 1
-GAACAUAUGAAGGAAACGGCGUUACAAGCGCACGAGUUCAACUUAGUGUGUACUUAACUUCCGUUACAUGGCCAU------ACACACACAC------------------------ACAA
-((((.......(....).((((.....))))....))))......(((((((((((((....))))...))...)------))))))....------------------------.... ( -19.60)
>DroYak_CAF1 7059 108 + 1
-AAACAUAUGAAGGAAGCGCCGCUACAAGCGCACGAGUUCAACUUAGUGUGUACUUAACUUCCGUUACAUGGCCGCCA--CUUCACCUACACA--------GCUGCAUAC-CUCACUCAC
-.......(((((...((((((......(((((((((.....))).))))))...((((....))))..))).)))..--)))))........--------.........-......... ( -21.30)
>DroAna_CAF1 6161 99 + 1
-AAACAUAUAAAGGAAGCGCCGCUACAAGCGCACGAGUUCAACUUAGUGUGUACUUAACUUCCGUUACAUGGCCACCA--CUACACCUACA-----------------AC-CGAACUCAC
-...............((((........))))..((((((....(((.(((((..((((....))))..(((...)))--.))))))))..-----------------..-.)))))).. ( -21.50)
>consensus
_AAACAUAUGAAGGAAGCGCCGCUACAAGCGCACGAGUUCAACUUAGUGUGUACUUAACUUCCGUUACAUGGCCGCCA__CUACACCUACAC________________AC_CUCACUCAC
....(((.(((.(((((.(......)..(((((((((.....))).))))))......))))).))).)))................................................. (-14.23 = -14.28 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:15 2006