| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,145,333 – 25,145,426 |
| Length | 93 |
| Max. P | 0.829318 |
| Location | 25,145,333 – 25,145,426 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 83.78 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -16.90 |
| Energy contribution | -16.78 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25145333 93 - 27905053 G--UAAGU---AUCUUAAAAACUAUAUAUACCCUACGGUAGGGUACAACGCAACGCGACAGUGUGACCAGUUGUCCUUUGCGGCGGCAUACCAAAGCA .--.....---.................(((((((...))))))).........((....(((((.((.(((((.....))))))))))))....)). ( -21.30) >DroSec_CAF1 3702 93 - 1 A--UAAAUUCAUUCUUAAAACCUAUA-AUACCCUACGGUAGGGUACAACGCCA--CGAUAGUGUGACCAGUUGUACUUUGCGGCGUCAUACCAAAGCA .--.......................-.((((....)))).((((..(((((.--(((.((((..(....)..))))))).)))))..))))...... ( -24.30) >DroSim_CAF1 3667 95 - 1 A--UAAAUUCAUUCUUAAAACCUAUA-AUACCCUACGGUAGGGUACAAAGCAACGCGAUAGUGUGACCAGUUGUACUUUGCGGCGUCAUACCAAAGCA .--.......................-.(((((((...))))))).........((....(((((((..(((((.....))))))))))))....)). ( -22.10) >DroEre_CAF1 3721 97 - 1 AGCGAAGUGUAUGCUUAAGAACCAUA-AUACCCUACGGUAGGGUACAACGCAACGCGACAGUGUGACCAGUCGCGCUAGGCGGUAGCAUACCAAAGCA .((...(.(((((((.....(((...-.(((((((...)))))))....((..((((((..........))))))....)))))))))))))...)). ( -32.90) >DroYak_CAF1 3729 95 - 1 A--AAAAUAUAUUCUCUAAAACUAUA-AUACCCUACUGUAGGGUACAACGCAACGCGACAGUGUGACCAUUUGCACUUUGCGGUCACAUACCAAAGCA .--.......................-.(((((((...)))))))....((...((((.((((..(....)..))))))))(((.....)))...)). ( -22.30) >consensus A__UAAAUUCAUUCUUAAAAACUAUA_AUACCCUACGGUAGGGUACAACGCAACGCGACAGUGUGACCAGUUGUACUUUGCGGCGGCAUACCAAAGCA ............................(((((((...))))))).........((....(((((....(((((.....)))))..)))))....)). (-16.90 = -16.78 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:15 2006