| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,136,955 – 25,137,070 |
| Length | 115 |
| Max. P | 0.621513 |
| Location | 25,136,955 – 25,137,070 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.66 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -19.40 |
| Energy contribution | -20.37 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25136955 115 + 27905053 AUUUUUUUUGGGCGGCAGACAUUGCAUAAAUAUAAAUAUUUCGUUUGCAUGGACAGCCCAUCUCCA--GCAGACGAUGAGUGCACUGCGAGUACUAAUGAGUGCCAGAUCAAAGCCA ..........(((.((((....(((((.((((....))))((((((((.((((.........))))--))))))))...)))))))))(.(((((....))))))........))). ( -32.60) >DroSec_CAF1 65326 113 + 1 AUUUU-UUUGGGCGGCAGACAUUGCAUAAAUAUAAAUAUUUCGUUUGCAUGGACAGCCU-GCUCCA--GCAGACGAUGACUGCACUGCGAGUACUAAUGAGUGCCAGAUCAAAGCCA .....-....(((.((((....((((..((((....))))((((((((.((((......-..))))--))))))))....))))))))(.(((((....))))))........))). ( -31.70) >DroSim_CAF1 67800 113 + 1 AUUUU-UUUGGGCGGCAGACAUUGCAUAAAUAUAAAUAUUUCGUUUGCAUGGACAGCCU-GCUCCA--GCAGACGAUGAGUGCACUGCGAGUACUAAUGAGUGCCAGAUCAAAGCCA .....-....(((.((((....(((((.((((....))))((((((((.((((......-..))))--))))))))...)))))))))(.(((((....))))))........))). ( -33.40) >DroEre_CAF1 67774 90 + 1 GUUU--UUUGGGCGGCAGACGCUGCAUAAAUAUAAAUAUUUCGUUUGCACGG----------------GCAGACGAUGAGUGCACUG---------AUGAGUGCCAGAUCAAAGCCA ....--..((((((((....)))))...............((((((((....----------------))))))))(((..(((((.---------...)))))....)))...))) ( -27.40) >DroYak_CAF1 67902 99 + 1 GUUU--UUUGGGCGGCAGACAUUGCGCAAAUAUACAUAUUUCGUUUGCAUGG----------------GCAGACGAUGAGUGCACUGCGAGUACUAAUGAGUGCCAGAUUCAAGCCA ....--....(((.((((....(((((.((((....))))((((((((....----------------))))))))...)))))))))(.(((((....))))))........))). ( -30.30) >DroAna_CAF1 73755 106 + 1 ---UU-UUUGGGCGGCAGUCAGUGCAUAAAUAUA------UUGUUUCCAAGGGGAGUCU-GCCAGAGUGCAGACGAUGAGUGCAGUGCGAGUACUAAUGAGUGCCAGAUCAAAGUCA ---.(-(((((..((((.(((..((((.......------.....(((....)))((((-((......)))))).....))))((((....))))..))).))))...))))))... ( -31.80) >consensus AUUUU_UUUGGGCGGCAGACAUUGCAUAAAUAUAAAUAUUUCGUUUGCAUGGACAGCCU_GCUCCA__GCAGACGAUGAGUGCACUGCGAGUACUAAUGAGUGCCAGAUCAAAGCCA ..........(((.((((....(((((.............((((((((....................))))))))...)))))))))..(((((....))))).........))). (-19.40 = -20.37 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:14 2006