Locus 9511

Sequence ID 3R_DroMel_CAF1
Location 25,134,403 – 25,134,504
Length 101
Max. P 0.607690
window15223

overview

Window 3

Location 25,134,403 – 25,134,504
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -35.00
Consensus MFE -22.35
Energy contribution -23.22
Covariance contribution 0.86
Combinations/Pair 1.18
Mean z-score -2.07
Structure conservation index 0.64
SVM decision value 0.15
SVM RNA-class probability 0.607690
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25134403 101 + 27905053
AAGCUCGCCCAACUGGUGGUCAACUAGGACCACCCCAAAUGAGUCAAACUUUCCGGUUCCUUUGUGCAGCGGGCGGAACUUCCCACCGAGCUGGUUCCACU
.(((((((((....(((((((......))))))).((((.((..(.........)..)).))))......))))((......))...)))))......... ( -34.30)
>DroPse_CAF1 69081 97 + 1
AAGCCUGCCCAGUUGGUGAUCUGCUGGGACCACCCCAAA--AGUGAAACUUUCCCG--CCAUUGUUCAGCGGGUGGAACUUCCCACAGCGUUGGUUCCACU
..((.((..((((.((((......((((.....))))((--((.....))))..))--))))))..)))).(((((((((..(......)..))))))))) ( -29.90)
>DroSim_CAF1 65306 101 + 1
AAGCUCGCCCAACUGGUGGUCAACUAAGACCACCCCAAAGGAGUCGAACUUUCCGGGUCCUUUGUGCAGCGGGCGGAAUUUCCCACAGAGCUGGUUCCACU
.(((((((((....(((((((......))))))).(((((((.(((.......))).)))))))......))))((......))...)))))......... ( -43.50)
>DroEre_CAF1 65270 88 + 1
-----------ACUGGUGGCCAACUAGGACCACCCCA-AGCAGUCAAACUUUCCGGGUCCU-UGUGCAGCGGGCGGAACUUCCCACCGAGCUGGUUCCACU
-----------...(((((...((.((((((.....(-((........)))....))))))-.)).((((.((.((......)).))..))))...))))) ( -27.60)
>DroYak_CAF1 65285 101 + 1
AAGCUCGCCCAACUGGUGGUCACCGAGGACCACCCCAAAGGAGUCAAACUUUCCGGCUCCUUUGUGCAGCGGGCGGAACUUCCCACCGAGCUGGUUCCACU
.(((((((((....(((((((......))))))).((((((((((.........))))))))))......))))((......))...)))))......... ( -44.80)
>DroPer_CAF1 69379 97 + 1
AAGCCUGCCCAGUUGGUGAUCUGCUGGGACCACCCCAAA--AGUGAAACUUUCCCG--CCAUUGUUCAGCGGGUGGAACUUCCCACAGCGUUGGUUCCACU
..((.((..((((.((((......((((.....))))((--((.....))))..))--))))))..)))).(((((((((..(......)..))))))))) ( -29.90)
>consensus
AAGCUCGCCCAACUGGUGGUCAACUAGGACCACCCCAAAGGAGUCAAACUUUCCGG_UCCUUUGUGCAGCGGGCGGAACUUCCCACAGAGCUGGUUCCACU
..((((((......(((((((......))))))).......((.....))..................))))))((((((..(......)..))))))... (-22.35 = -23.22 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:13 2006