| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,134,220 – 25,134,320 |
| Length | 100 |
| Max. P | 0.533999 |
| Location | 25,134,220 – 25,134,320 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.85 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -15.12 |
| Energy contribution | -16.23 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25134220 100 - 27905053 UAUAAAUGAAUGAUCUCAAAUAAAGAAGAUCGAAAUAGAGUGACAAUCAAUAGACAAAAGGCUCG---------GAACCAUUACAUUUAUUUCGAUCUAAUGAUUCUAC .......((((.((((.......)))(((((((((((((((((...((....)).....((....---------...)).)))).)))))))))))))..).))))... ( -18.10) >DroSec_CAF1 62604 109 - 1 UAUAAAUGGAUGAUCUCAAAUUAAGAAGAUCGAAAUUGAGUGACAAACCGUAGACAAACGGCACAGUCGUUCGAGAACCAUUACAUUUAAUUCGAUCUGAUGAUUCUAC .......((((.(((((.......))((((((((.(((((((.....((((......))))...(((.(((....))).))).)))))))))))))))))).))))... ( -23.80) >DroSim_CAF1 65116 109 - 1 UAUAAAUGAAUGAUCUCAAAUUAAGAAGAUCGAAAUAGAGUGACAAACCGUGGACAAACGGCUCAGUCUUUCGAGAACCAUUACAUUUAUUUCGAUCUAAUGAUUCUAC .......((((.((((.......)))(((((((((((((((((....((((......))))(((........))).....)))).)))))))))))))..).))))... ( -25.60) >consensus UAUAAAUGAAUGAUCUCAAAUUAAGAAGAUCGAAAUAGAGUGACAAACCGUAGACAAACGGCUCAGUC_UUCGAGAACCAUUACAUUUAUUUCGAUCUAAUGAUUCUAC .......((((.((((.......)))(((((((((((((((((......((......))((.((..........)).)).)))).)))))))))))))..).))))... (-15.12 = -16.23 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:12 2006