Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,131,360 – 3,131,480 |
Length | 120 |
Max. P | 0.946273 |
Location | 3,131,360 – 3,131,480 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -11.23 |
Energy contribution | -11.67 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.16 |
Mean z-score | -1.91 |
Structure conservation index | 0.45 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3131360 120 + 27905053 UCCAUUGAAUAAUAUUCAUCUUGUUUGAUCCAAGUAGAUCAAAGAGUAAAUUAAAAGUUACUUAUAGAUCGAUGUGGAAAAGUAGGAGAUCAAAUCUUAUUAAGAACUUUUUUAGUUCUA ....(..(((((........)))))..)((((....((((...((((((........))))))...))))....))))..(((((((.......))))))).((((((.....)))))). ( -25.00) >DroSec_CAF1 6802 120 + 1 ACCAUUGAAUAAUAUUCCCCUUGUUUGAUCCAAGUAGAUCAAAGAGUUAAUUGAAAGAUACUUAUAGAUCGAAGUUGAAAAGUGGGGGAUCGAAUCUUAUUAAGAACUAUUUUAGUUCUA .......(((((.((((((((..(((....(((.(.((((...((((..(((....)))))))...))))..).)))..)))..))))...)))).))))).(((((((...))))))). ( -25.90) >DroSim_CAF1 7365 120 + 1 ACCAUUGAAUAAUAUUCCCCUUGUUUGAUCCAAGUAGAUCAAAGAGUAAAUUGAAAGAUACUUAUAGAUCGAAGUUGAAAAGUGGGGGAUCGAAUCUUAUUAAGAACUAUUUUAGUUCUA .......(((((.((((((((..(((....(((.(.((((...(((((..((....)))))))...))))..).)))..)))..))))...)))).))))).(((((((...))))))). ( -26.10) >DroEre_CAF1 7059 116 + 1 ACUGUUGAAUAAUAUUUCCCUUGUUUGAUCUAAGCAGAUCGAUGGG-AAACUAAAAGAUACUUAUAGAUCGAAGCUAAGAAGUGAGAGCUCGAAUC---UUAAGAUCUUUUUUAGUUGUA ........(((((.((((((....(((((((....))))))).)))-)))..(((((((.((((.(((((((.(((..........)))))).)))---))))))))))))...))))). ( -30.00) >DroYak_CAF1 7143 91 + 1 -------------GUUUCAUCUGUUUGAUCUGAGUAGAUCAAUGGGGAAAUUAAAA----------GAUCGAA------AAGUGAGAGAUCGAAUCGUAUUAAGAACUAUUUUAGUUCUA -------------(((((.((((((.(((((....)))))))))))))))).....----------((((...------........))))...........(((((((...))))))). ( -18.70) >consensus ACCAUUGAAUAAUAUUCCCCUUGUUUGAUCCAAGUAGAUCAAAGAGUAAAUUAAAAGAUACUUAUAGAUCGAAGUUGAAAAGUGGGAGAUCGAAUCUUAUUAAGAACUAUUUUAGUUCUA ....................((.(((((((......))))))).))....................((((.................))))...........((((((.....)))))). (-11.23 = -11.67 + 0.44)
Location | 3,131,360 – 3,131,480 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.92 |
Mean single sequence MFE | -20.53 |
Consensus MFE | -9.77 |
Energy contribution | -10.73 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.17 |
Mean z-score | -2.26 |
Structure conservation index | 0.48 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3131360 120 - 27905053 UAGAACUAAAAAAGUUCUUAAUAAGAUUUGAUCUCCUACUUUUCCACAUCGAUCUAUAAGUAACUUUUAAUUUACUCUUUGAUCUACUUGGAUCAAACAAGAUGAAUAUUAUUCAAUGGA .((((((.....)))))).(((((...((.((((........((((....((((.(..(((((........)))))..).))))....)))).......)))).))..)))))....... ( -18.76) >DroSec_CAF1 6802 120 - 1 UAGAACUAAAAUAGUUCUUAAUAAGAUUCGAUCCCCCACUUUUCAACUUCGAUCUAUAAGUAUCUUUCAAUUAACUCUUUGAUCUACUUGGAUCAAACAAGGGGAAUAUUAUUCAAUGGU .(((((((...))))))).............(((((.((((.((......)).....))))................((((((((....))))))))...)))))............... ( -21.00) >DroSim_CAF1 7365 120 - 1 UAGAACUAAAAUAGUUCUUAAUAAGAUUCGAUCCCCCACUUUUCAACUUCGAUCUAUAAGUAUCUUUCAAUUUACUCUUUGAUCUACUUGGAUCAAACAAGGGGAAUAUUAUUCAAUGGU .(((((((...))))))).............(((((.((((.((......)).....))))................((((((((....))))))))...)))))............... ( -21.00) >DroEre_CAF1 7059 116 - 1 UACAACUAAAAAAGAUCUUAA---GAUUCGAGCUCUCACUUCUUAGCUUCGAUCUAUAAGUAUCUUUUAGUUU-CCCAUCGAUCUGCUUAGAUCAAACAAGGGAAAUAUUAUUCAACAGU .........((((((((((((---((((.(((((..........))))).))))).)))).))))))).((((-(((...(((((....)))))......)))))))............. ( -27.80) >DroYak_CAF1 7143 91 - 1 UAGAACUAAAAUAGUUCUUAAUACGAUUCGAUCUCUCACUU------UUCGAUC----------UUUUAAUUUCCCCAUUGAUCUACUCAGAUCAAACAGAUGAAAC------------- .(((((((...)))))))........(((((((........------...))))----------..............(((((((....)))))))......)))..------------- ( -14.10) >consensus UAGAACUAAAAUAGUUCUUAAUAAGAUUCGAUCUCCCACUUUUCAACUUCGAUCUAUAAGUAUCUUUUAAUUUACUCUUUGAUCUACUUGGAUCAAACAAGGGGAAUAUUAUUCAAUGGU .((((((.....))))))......(((.(((.................))))))....................(((((((((((....)))))))...))))................. ( -9.77 = -10.73 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:23 2006