| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,131,567 – 25,131,676 |
| Length | 109 |
| Max. P | 0.778376 |
| Location | 25,131,567 – 25,131,676 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.14 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25131567 109 - 27905053 AUGU---CCUCAAGUUUCAGGGCCAGAUAGUUCUUAAGCCGAAUCGGAUUCGAUCUGAUCGUCAAUUAGAGUGCACUUGAGCAAAUCGGCCAUGAAAUUGGAGCAGCCACGC ....---.(((.(((((((.((((.(((.((((....(.(((.((((((...))))))))).).....(((....)))))))..))))))).))))))).)))......... ( -29.30) >DroEre_CAF1 62510 94 - 1 AUGU---CCUCGAAUUUCAUGGCCAGAUAGUCCUUGAGCCGAA---------------UCAUUAAUUAGAAUGCACUUGAGCAAAUCGGCCAUGAAAUUGGAGCAGCCACGC ....---.(((.((((((((((((...((((...(((......---------------)))...))))...(((......)))....)))))))))))).)))......... ( -28.70) >DroYak_CAF1 62371 109 - 1 AUGU---CCUCAAAUUUCAUGGCCAGAUAGUCCUUAAGCCGAAUCCGAUUCGAUCAGAUCAUUAAUUAGAAUGCACUUGAGCAAAUCGGCCAUGAAAUUGGAGCAGCCACGC ....---.(((.((((((((((((.(((....((((((.(((((...))))).......((((......))))..))))))...))))))))))))))).)))......... ( -29.80) >DroMoj_CAF1 73013 98 - 1 CUGUUGUUGUCAAAUUUAGUGGCUAACGAG--UUUCAGUCGAAC------------CAUUAUUAAUUAGAAUGCACUUGGGCAAAUCGGCCAUGAAAUUGGAGCAACCUUGC ..((((((.((((.(((.((((((..(((.--......)))...------------...............(((......)))....)))))).)))))))))))))..... ( -19.50) >DroAna_CAF1 68371 104 - 1 AUGU---CCUCAAAUUUCAUGGCUUAAUAGUUUAUAAGCUGAAUCCACUUCGA-----UCAUUAAUUAGAAUGCACUUGAGCCAAUCGGCCAUGAAAUUGGAGCAACCACGC ....---.(((.((((((((((((.....(((((...((((((.....)))).-----((........))..))...))))).....)))))))))))).)))......... ( -23.30) >DroPer_CAF1 65580 97 - 1 AUGU---CCUCAAAUUUUAUGGUCAAAUAGGUUUCAA-UCGAGUC-----------AUCCAUUAAUUAGAAUGCACUUGGACAAAUCGCCCAUGAAAUUGGAGCAACCACGU ....---.(((.((((((((((.......(((((...-(((((((-----------((.(........).))).))))))..)))))..)))))))))).)))......... ( -19.00) >consensus AUGU___CCUCAAAUUUCAUGGCCAAAUAGUUCUUAAGCCGAAUC____________AUCAUUAAUUAGAAUGCACUUGAGCAAAUCGGCCAUGAAAUUGGAGCAACCACGC ........(((.((((((((((((..................................((........)).(((......)))....)))))))))))).)))......... (-17.46 = -17.88 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:11 2006