Locus 9508

Sequence ID 3R_DroMel_CAF1
Location 25,123,113 – 25,123,221
Length 108
Max. P 0.621287
window15220

overview

Window 0

Location 25,123,113 – 25,123,221
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -19.53
Consensus MFE -12.47
Energy contribution -14.08
Covariance contribution 1.61
Combinations/Pair 1.24
Mean z-score -1.45
Structure conservation index 0.64
SVM decision value 0.18
SVM RNA-class probability 0.621287
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25123113 108 + 27905053
UUUCCCCUGAGGUUUCCCCAAAUCCUUAAAAGUCAAACCUACUCAAACCUUUCCCAUUGCAUAAAUGAAAAUUGCACUUUCAGUUCAUCGAGGCCUGGGAAAAUUUUU
((((((...(((((((......................................((((.....))))..(((((......)))))....)))))))))))))...... ( -16.60)
>DroSec_CAF1 51600 107 + 1
UAUCCCCUGAGGUUUCCCCAAAUCCUUAUGAGUCAAACCUACUCAAACCUUUCCCA-UGCAUAAAUAUAAAUUGCACUUUCCGUUCAUUGAGGCCUGGGAAAAUUUGU
..((((...(((((((............(((((.......)))))...........-((((...........)))).............)))))))))))........ ( -19.40)
>DroSim_CAF1 54148 108 + 1
UUUCCCCUGAGGUUUCCCCAAAUCCUUAAGAGCCAAACCUACUCAAACCUUUCCCAUUGCAUAAAUAUAAAUUGCACUUUCCGUUCAUCGAGGCCUGGGAAAAUUUGU
((((((...(((((((.............(((.........))).............((((...........)))).............)))))))))))))...... ( -18.70)
>DroEre_CAF1 54138 107 + 1
UUUCCCUUGGGGUU-CCCAAAAUCCUGAAGAGUCAAACCUACUCAAACCUUUCCCAUUGCAUAAAUACAAAUUGCACUUUCAGUUCAUGGAGGCCUGGGAAAAUUCGC
((((((...((((.-.(((.....(((((((((.......)))).............((((...........))))..)))))....)))..))))))))))...... ( -26.50)
>DroYak_CAF1 53644 108 + 1
AUUCCCUUGAGGCUGCCCAAAAUCCUGAAGAGUCAAACCUACUCAAACCUUUUCCAUUGCAUAAAUAUAAAUUGCACUUUCAGUUCAUCGAGGCCUGGGAAAAUUUCU
.(((((...(((((..........(((((((((.......)))).............((((...........))))..)))))........))))))))))....... ( -22.37)
>DroAna_CAF1 59996 88 + 1
UUUCCUUGGGGGUUUCCUUAAUU-U------------UCUGCUCAAACCUUUCCCCUUACAUAAAUGGCAAUU------UAUUAACUUCAGAGCCUGGGAAAAUAUU-
((((((.(((((...........-.------------..............)))))..........(((....------.............))).)))))).....- ( -13.60)
>consensus
UUUCCCCUGAGGUUUCCCCAAAUCCUUAAGAGUCAAACCUACUCAAACCUUUCCCAUUGCAUAAAUAUAAAUUGCACUUUCAGUUCAUCGAGGCCUGGGAAAAUUUGU
((((((...(((((((.............((((.......)))).............((((...........)))).............)))))))))))))...... (-12.47 = -14.08 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:10 2006