Locus 9506

Sequence ID 3R_DroMel_CAF1
Location 25,120,599 – 25,120,700
Length 101
Max. P 0.817349
window15217

overview

Window 7

Location 25,120,599 – 25,120,700
Length 101
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 71.70
Mean single sequence MFE -28.06
Consensus MFE -11.65
Energy contribution -11.41
Covariance contribution -0.24
Combinations/Pair 1.17
Mean z-score -1.88
Structure conservation index 0.42
SVM decision value 0.67
SVM RNA-class probability 0.817349
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25120599 101 - 27905053
UCUCAAUUCCGUUGCCGAC--CCCGAUUCAAUUUGGCUUUUAUUGGGAU-CUCGGGCAUCCCGAUCCCGAUCCCGAUGCGAUCCUAAUUGCGGUGGCAAUAGCU-
..........(((((((..--.(((...(((((.((.((.(((((((((-((((((...)))))....)))))))))).)).)).)))))))))))))))....- ( -36.40)
>DroSec_CAF1 49140 82 - 1
UCCCAAAUC--------------CGAUUCAAUUUGGCUUUUAUUGGGAU-CUCGGGCAUCCCGCUC-------CGAUGCGAUCCUAAUUGCGGUGGCAAUAGCU-
..((((((.--------------.......)))))).......((((((-(((((((.....)).)-------)))...)))))))(((((....)))))....- ( -23.60)
>DroSim_CAF1 51688 82 - 1
UCCCAAAUC--------------CGAUUCAAUUUGGCUUUUAUUGGGAU-CUCGGGCAUCCCGCUC-------CGAUGCGAUCCUAAUUGCGGUGGCAAUAGCU-
..((((((.--------------.......)))))).......((((((-(((((((.....)).)-------)))...)))))))(((((....)))))....- ( -23.60)
>DroEre_CAF1 51907 93 - 1
UCUCGAUUCCGAUCCC---GAGCCGAUUCAAUUUGGCUUUUAUUGGGAU-CUCGGGCAUCCCGAUG-------CGGGGCGAUCCUAAUUGCGGUGGCAAUAGCU-
..(((.((((((((((---(((((((......))))))).....)))))-)(((((...)))))..-------.))))))).....(((((....)))))....- ( -34.30)
>DroPer_CAF1 55389 83 - 1
---------------------CCUGAUUCAAUUUGCUUUUUAUUAGGAUGCCCGGGGUUGCCGAGAACGGAG-AACCGAGAUCCUAAUUGCGGUAGAAGUAUGUA
---------------------..........((((((....((((((((.(.(((..((.(((....)))))-..))).)))))))))...))))))........ ( -22.40)
>consensus
UCCCAAAUC_____________CCGAUUCAAUUUGGCUUUUAUUGGGAU_CUCGGGCAUCCCGAUC_______CGAUGCGAUCCUAAUUGCGGUGGCAAUAGCU_
..................................((((.....((((((...(((.....))).................))))))(((((....))))))))). (-11.65 = -11.41 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:07 2006