| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,118,883 – 25,118,992 |
| Length | 109 |
| Max. P | 0.515685 |
| Location | 25,118,883 – 25,118,992 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.65 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -12.92 |
| Energy contribution | -12.44 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25118883 109 + 27905053 UAUUUUUGAAGUCAUCAUAUUGCCGGUGAUUAU--AUUUUCUUUGGCAAUGAUCUCAAUAGCCUUGAGUUUAUUUAUUUAUUUACUUUAAAAACUUAUUAUUCCGCUUUGA ..((((((((((.....(((((((((.((....--....)).)))))))))..(((((.....)))))...............)))))))))).................. ( -20.60) >DroSec_CAF1 47446 111 + 1 CAUUUUUGAAGUCAUCAUAUUGCCGGUGAUUAUAUAUUUUCUUUGGCAAUGUUCUCAAUAGCCUUUAGUUUAUUUAUUUAUUUACUUUGAAAACUUAUCACUCCGCUUUGA ..((((..((((....((((((((((.((..........)).))))))))))....(((((.(....).))))).........))))..)))).................. ( -16.00) >DroSim_CAF1 49997 111 + 1 CAUUUUUGAAGUCAUCAUAUUGCCGGUGAUUAUAUAUUUUCUUUGGCAAUGAUCUCAAUAGCCUUGAGUUUAUUUAUUUAUUUACUUUAAAAACUUAUCACUCCGCUUUGA ..((((((((((.....(((((((((.((..........)).)))))))))..(((((.....)))))...............)))))))))).................. ( -19.70) >DroEre_CAF1 50269 106 + 1 CGUCUUUGAAGUCGUCCUAUUGCCAGUGAUUAU--GUUUCCUUUGGCUAUGAUUUCAAUAGCCUUGAGUUUGUUUAUUUAUUUACCUUAAAAACCUG---UGCCGCUUUGA .((..((((((((((......(((((.((....--...))..))))).))))))))))..))...................................---........... ( -16.10) >DroYak_CAF1 49455 89 + 1 ----UUUGAAGUCAUCAUAUUGCCAGUGAUUAU--AUUUCCUUUGGCAAUGACUUCAAUAGCCUUGAGUUUAUUUAUUUAUUCA----------------UGCCGCUUCGA ----.((((((((((.....((((((.((....--...))..))))))))))))))))..((..(((((..........)))))----------------.))........ ( -21.60) >consensus CAUUUUUGAAGUCAUCAUAUUGCCGGUGAUUAU__AUUUUCUUUGGCAAUGAUCUCAAUAGCCUUGAGUUUAUUUAUUUAUUUACUUUAAAAACUUAU_AUUCCGCUUUGA .....(((((((.....(((((((((.((.........))..)))))))))..(((((.....)))))....................................))))))) (-12.92 = -12.44 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:06 2006