| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,117,722 – 25,117,812 |
| Length | 90 |
| Max. P | 0.744537 |
| Location | 25,117,722 – 25,117,812 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -13.68 |
| Consensus MFE | -11.42 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25117722 90 - 27905053 CAAUACCCUUCUCU-GUAAGGGUAUAAAAAUGCGAUAAGCCGGCAACAUUU-UUACCAAUAUCACAAA-AUACA------UAAUAAUUCUUUAAAAUAG ..((((((((....-..))))))))((((((((.....)).(....)))))-))..............-.....------................... ( -12.40) >DroSec_CAF1 46305 91 - 1 CAAUACCCUUAUUU-GUGAGGGUAUAAAAAUGCGAAAAGUCAGCAACAUUUUUUACCAAUAUCACAAA-AUACA------CAAUAAUUCUUGAAAAUAG ...........(((-((((.((((.((((.(((.........)))...)))).))))....)))))))-.....------................... ( -14.60) >DroSim_CAF1 48857 90 - 1 CAAUACCCUUCUUU-GUGAGGGUAUAAAAAUGCGACAAGUCAGCAACAUUU-UUACCAAUAUCACAAA-AUACA------CAAUAAUUCUUGAAAAUAG ...........(((-((((.((((.(((..(((((....)).)))...)))-.))))....)))))))-.....------................... ( -15.00) >DroEre_CAF1 49086 97 - 1 CAAUACCCUCUUUUAGUGAGGGUAUACAAAUGUGCCAGGAUAGCAAAAUAU-UUACUAAUAUCAUCAA-AUACACGAUAACAAUAAUUCUAAUGAAUAG ..((((((((.......)))))))).....((((....(((.(....((((-(....)))))))))..-...)))).........((((....)))).. ( -15.40) >DroYak_CAF1 48224 96 - 1 -AAUGCCCUUCUUU-CUGAGGGUAUAAAAAUGUGCCAAGCUAGCAAAAUGU-UAACCAAUAUCACCAAAAAACACGAUAAUAAUAAUUCUUAAAAAUAG -.((((((((....-..)))))))).......(((.......)))......-.......((((............)))).................... ( -11.00) >consensus CAAUACCCUUCUUU_GUGAGGGUAUAAAAAUGCGACAAGCCAGCAACAUUU_UUACCAAUAUCACAAA_AUACA______CAAUAAUUCUUAAAAAUAG ..((((((((.......)))))))).....(((.........)))...................................................... (-11.42 = -10.70 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:04 2006