Locus 9500

Sequence ID 3R_DroMel_CAF1
Location 25,115,264 – 25,115,355
Length 91
Max. P 0.827937
window15207

overview

Window 7

Location 25,115,264 – 25,115,355
Length 91
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -19.81
Consensus MFE -11.41
Energy contribution -12.36
Covariance contribution 0.94
Combinations/Pair 1.07
Mean z-score -2.51
Structure conservation index 0.58
SVM decision value 0.70
SVM RNA-class probability 0.827937
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25115264 91 - 27905053
-C-UCGGGCAUUGGCGACACUUGA------------AGCCCACAGAUAAU-----UUUCCUUUUUUUUUUCGAGUUUUUGUCACAAUGCCCAUUCCCACGAUACUCUCUU
-.-..((((((((..(((((((((------------((......((....-----..))........))))))))....))).))))))))................... ( -22.54)
>DroPse_CAF1 49509 97 - 1
AC-AAGUACAUUGGCGACACUUGAACCGUUCGACAAAGCCCACAGACAAU-----UUUCCUCUC-AU-U-----UUUUUGUCACAAUGGCCAUUCCCACGAUACUCUCCU
..-.((((...(((.((....((..(((((.(((((((.....(((....-----.....))).-..-.-----.)))))))..))))).)).)))))...))))..... ( -12.70)
>DroSim_CAF1 46398 88 - 1
-C-UCGGGCAUUGGCGACACUUGA------------AGCCCACAGAUAAU-----UUUCCUUU---UUUUCGAGUUUUUGUCACAAUGCCCAUUCCCACGAUACUCUCUU
-.-..((((((((..(((((((((------------((......((....-----..))....---.))))))))....))).))))))))................... ( -23.30)
>DroEre_CAF1 46679 89 - 1
-C-UCGGGCAUUGGCGACACUUGA------------AGCCCAGAGACAAU-----UUUCCUUUU-UU-UUCGAGUUUUUGUCACAAUGCCCAUUCCCACGAUACUCUCUU
-.-..((((((((..(((((((((------------((...((((.....-----....)))).-.)-)))))))....))).))))))))................... ( -24.40)
>DroYak_CAF1 45681 91 - 1
-CUUCGGGCAUUGGCGACACUUGA------------AGCCCACAGACAAU-----UUUCCUUUU-UUCUUCGAGUUUUUGUCACAAUGCCCAUUCCCACGAUACUCUCUU
-....((((((((..(((((((((------------((.....((.....-----....))...-..))))))))....))).))))))))................... ( -24.50)
>DroAna_CAF1 48941 89 - 1
--------GAAUGGCGACACUUGA------------AGCCCGCAGACAAUGCCAUAUUCCUACU-UGUUUUUUGUUUUUGUCACAAUGCCCAUUCCCACGAUACUCUCUU
--------((((((.(.((.(((.------------.(....).(((((...((..........-.......))...))))).))))))))))))............... ( -11.43)
>consensus
_C_UCGGGCAUUGGCGACACUUGA____________AGCCCACAGACAAU_____UUUCCUUUU_UUUUUCGAGUUUUUGUCACAAUGCCCAUUCCCACGAUACUCUCUU
.....((((((((((......................)).....(((((............................))))).))))))))................... (-11.41 = -12.36 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:59 2006