Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,130,395 – 3,130,507 |
Length | 112 |
Max. P | 0.955509 |
Location | 3,130,395 – 3,130,507 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 93.72 |
Mean single sequence MFE | -42.16 |
Consensus MFE | -37.66 |
Energy contribution | -37.86 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.89 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3130395 112 - 27905053 GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU ((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))((((((.((((..((((........))))..))))....)).)))).. ( -44.20) >DroSec_CAF1 5843 112 - 1 GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU ((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))((((((.((((..((((........))))..))))....)).)))).. ( -44.20) >DroSim_CAF1 6413 112 - 1 GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU ((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))((((((.((((..((((........))))..))))....)).)))).. ( -44.20) >DroEre_CAF1 6106 106 - 1 GCCUUUGGCGGGCUGCAACUCUCGUUGCCUUCAGUUCGCUCGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUG------UCCACAUCCGCAU ((((..(((((((((((((....)))))....)))))))).))))..((((((.....))))))((((((..((((..(((....)))..)))------)...)).)))).. ( -42.10) >DroYak_CAF1 6229 103 - 1 GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUCGGACUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUG------CCCACAUCCA--- (((((((((((((((((((....))))....)))))))).))))...))).........(((.((((((((.(((....)))..))).)))))------.)))......--- ( -36.10) >consensus GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU ((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))(((((((.(((....)))..))).)))).................... (-37.66 = -37.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:21 2006