| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 600,597 – 600,692 |
| Length | 95 |
| Max. P | 0.902089 |
| Location | 600,597 – 600,692 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 95.09 |
| Mean single sequence MFE | -21.51 |
| Consensus MFE | -20.41 |
| Energy contribution | -20.41 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 600597 95 + 27905053 UACAUCUUUCUGAUCCUUAAUCAUCCUUUUAGGUGAUUCUCCUGCUACCAUGGGAUCCACCAGUUUCAUAUAUAAUGGAUCGGGCUCGUUUGCAA .........(((((((...............((((..((((.((....)).))))..))))...............)))))))((......)).. ( -21.81) >DroSec_CAF1 16637 95 + 1 UAUAUCUUUCUGAUCCUUAAUCAUUCUUUUCGGUGAUUCUCCUGCUACCAUGGGAUCCACCAGUUUCAUAUAUAAUGGAUCGGGCUCGUUUCCAA ........((((((((...............((((..((((.((....)).))))..))))...............))))))))........... ( -20.41) >DroSim_CAF1 15806 95 + 1 UAUAUCUUUCUGAUCCUUAAUCAUCCUGUUAGGUGAUUCUCCUGCUGCCAUGGGAUCCACCAGCUUCAUAUAUAAUGGAUCGGGCUCGUUUCCAA ........((((((((...........(((.((((..((((.((....)).))))..)))))))............))))))))........... ( -22.30) >consensus UAUAUCUUUCUGAUCCUUAAUCAUCCUUUUAGGUGAUUCUCCUGCUACCAUGGGAUCCACCAGUUUCAUAUAUAAUGGAUCGGGCUCGUUUCCAA ........((((((((...............((((..((((.((....)).))))..))))...............))))))))........... (-20.41 = -20.41 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:56 2006