| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,111,943 – 25,112,034 |
| Length | 91 |
| Max. P | 0.850888 |
| Location | 25,111,943 – 25,112,034 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.73 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -19.58 |
| Energy contribution | -20.57 |
| Covariance contribution | 0.99 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25111943 91 - 27905053 AGGGGUUUAUGUGUU-ACCAACAGCUGAUUCAACAGAAAUUUUCCCAGCACUCCUCGGCUCAGCUGAUGUGUCC---CCACAAGAUCCCAGCCC------A .(((((((.((((..-((((.((((((((((....))).........((........))))))))).)).))..---.))))))))))).....------. ( -26.70) >DroSec_CAF1 40819 91 - 1 AGGGGUUUAUGUGUU-ACCAACAGCUGAUUGAACAGAAAUUUUCCCAGCACUCCUCGGCUCAGCUGAUGUGUCC---CCACAAGAUCCCAUCCC------A .(((((((.((((..-((((.(((((((..(((.(....).)))...((........))))))))).)).))..---.))))))))))).....------. ( -26.80) >DroSim_CAF1 42600 91 - 1 AGGGGUUUAUGUGUU-ACCAACAGCUGAUUGAACAGAAAUUUUCCCAGCACUCCUCGGCUCAGCUGAUGUGUCC---CCACAAGAUCCCAUCCC------A .(((((((.((((..-((((.(((((((..(((.(....).)))...((........))))))))).)).))..---.))))))))))).....------. ( -26.80) >DroEre_CAF1 41186 91 - 1 AGGGGUUUAUGUGUU-ACCAACAGCUGAUUGAACACAAAUUUUCCCAGCACUCCUUGGCUCAGCUGAUGUGUCC---CCACAAGAUCCCAUCCC------A .(((((((.((((..-((((.((((((((((....)))......((((......)))).))))))).)).))..---.))))))))))).....------. ( -26.90) >DroYak_CAF1 42270 100 - 1 AGGGUUUUAUGUGUU-ACCAACAGCUGAUUGAACAGAAAUUUUCCCAGCACUCCUCGGCUCAGCUGAUGUGUCCCCCCCACAAGAACCCAUCCCAUCCUAA .(((((((.((((..-((((.(((((((..(((.(....).)))...((........))))))))).)).))......)))))))))))............ ( -25.00) >DroAna_CAF1 45713 71 - 1 ------UUAUGUUUCGACCAACAGCUGAUUGAAGAAAAAUUUUCCCAGCACCUCCCGGCUCAGCUGAUGUGUCC---CCA--------------------- ------.........(((((.(((((((..(((((....)))))...((........))))))))).)).))).---...--------------------- ( -17.30) >consensus AGGGGUUUAUGUGUU_ACCAACAGCUGAUUGAACAGAAAUUUUCCCAGCACUCCUCGGCUCAGCUGAUGUGUCC___CCACAAGAUCCCAUCCC______A .(((((((.((((...((((.(((((((..(((.(....).)))...((........))))))))).)).))......)))))))))))............ (-19.58 = -20.57 + 0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:58 2006