Locus 9498

Sequence ID 3R_DroMel_CAF1
Location 25,111,704 – 25,111,796
Length 92
Max. P 0.989669
window15205

overview

Window 5

Location 25,111,704 – 25,111,796
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 91.97
Mean single sequence MFE -24.24
Consensus MFE -23.07
Energy contribution -22.77
Covariance contribution -0.30
Combinations/Pair 1.12
Mean z-score -1.67
Structure conservation index 0.95
SVM decision value 2.18
SVM RNA-class probability 0.989669
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25111704 92 - 27905053
UCCAACAAGGGAUAUCUCUAACUAGCCGUAAA-A-AAGUAUCUUU---UUGCCGUUGUUGCACUUUAUUUGGAGUGUCAACGGCUAAGCGAA-GUGCA
..((((.((((....))))........(((((-(-(......)))---)))).)))).(((((((..(((((.((....))..)))))..))-))))) ( -24.50)
>DroPse_CAF1 45620 93 - 1
UCCAACAAGGGAUAUCUCUAACUAGCCGUAAAAA-AAGUAUCUUU---CUGCCGUUGUUGCACUUUAUUUGGAGUGUCAACGGCUAAGCAAA-GUGCA
.......((((....))))...............-..(((.((((---(((((((((..(((((((....))))))))))))))..)).)))-)))). ( -24.40)
>DroYak_CAF1 42021 93 - 1
UCCAACAAGGGAUAUCUCUAACUAGCCGUAAAAA-AAGUAUCUUU---UUGCCGUUGUUGCACUUUAUUUGGAGUGUCAACGGCUAAGCGAA-GUGCG
..((((.((((....))))........(((((((-.......)))---)))).))))..((((((..(((((.((....))..)))))..))-)))). ( -23.90)
>DroMoj_CAF1 50391 98 - 1
UACAACAAGGGAUAUCUAUAACUAGCCGUAAAAAGUAGUAUCCUUUCUGAGCUGUUGUUGCACUUUAUUUGGAGUGUCAACGGCAAAAUGAGCGUGCA
(((...((((((((.((((...............))))))))))))....(((((((..(((((((....)))))))))))))).........))).. ( -25.26)
>DroAna_CAF1 45499 93 - 1
UCCAAGAAGGGAUAUCUCUAACUAGCCGUAAAAA-AAGUAUCUUU---UUGCCGUUGUUGCACUUUAUUUGGAGUGUCAACGACUAAGCGAA-GUGCA
.......((((....))))(((.(((.(((((((-.......)))---)))).))))))((((((..(((((.((....))..)))))..))-)))). ( -23.00)
>DroPer_CAF1 45578 93 - 1
UCCAACAAGGGAUAUCUCUAACUAGCCGUAAAAA-AAGUAUCUUU---CUGCCGUUGUUGCACUUUAUUUGGAGUGUCAACGGCUAAGCAAA-GUGCA
.......((((....))))...............-..(((.((((---(((((((((..(((((((....))))))))))))))..)).)))-)))). ( -24.40)
>consensus
UCCAACAAGGGAUAUCUCUAACUAGCCGUAAAAA_AAGUAUCUUU___UUGCCGUUGUUGCACUUUAUUUGGAGUGUCAACGGCUAAGCGAA_GUGCA
.......((((....))))..................((((.(((.....(((((((..(((((((....)))))))))))))).....))).)))). (-23.07 = -22.77 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:57 2006