| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,110,632 – 25,110,728 |
| Length | 96 |
| Max. P | 0.528627 |
| Location | 25,110,632 – 25,110,728 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -27.29 |
| Consensus MFE | -15.41 |
| Energy contribution | -16.41 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25110632 96 - 27905053 -----CACUUUGGCGGUCUUCUACAAACACACGCCAUAUAAGCAGACCCAAUCACUGGGAGGGACU---ACUACCCAUGCAC--ACACAUCCCGGGGCGCGGGAAC -----.....(((((((.((.....)).)).))))).....(((..((((.....)))).(((...---....))).)))..--.....(((((.....))))).. ( -27.10) >DroSec_CAF1 39451 101 - 1 GCCUGCACUUUGGCGGUCUUCUACAAACACACGCCAUACAAGCAGACCCAAUCACUGGGAGGGACCACUACUACCCAUGCAC--A---ACUGCGGGGCGCGGGAAC .(((((.((((((((((.((.....)).)).))))......((((.((((.....)))).(((..........)))......--.---.)))))))).)))))... ( -32.00) >DroSim_CAF1 40755 101 - 1 GCCUGCACUUUGGCGGUCUUCUACAAACACACGCCAUAUAAGCAGACCCAAUCACUGGGAGGGACUACCACUACCCAUGCAC--A---ACUGCGGGGCGCGGGAAC .(((((.((((((((((.((.....)).)).))))......((((.((((.....)))).(((..........)))......--.---.)))))))).)))))... ( -32.00) >DroEre_CAF1 39901 85 - 1 GCCUGCACUUUGGCGGUCUUCUACAAACACACGCCAUAUAAGCAGACCCAAUCACUUGGU----------CUACCCAUACCAAACCA-CAUACGGG---------- ..((((....(((((((.((.....)).)).))))).....)))).(((......(((((----------........)))))....-.....)))---------- ( -17.66) >DroYak_CAF1 40926 93 - 1 GCCUGCACUUUGGCGGUCUUCUACAAACACACGCCAUAUAAGCAGACCCAAUCACUUGGA----------CUACCCAUACCA--CCA-CCUCCGGGGUGAGGGAAC ..((((....(((((((.((.....)).)).))))).....))))..((((....)))).----------...(((.((((.--((.-.....)))))).)))... ( -27.70) >consensus GCCUGCACUUUGGCGGUCUUCUACAAACACACGCCAUAUAAGCAGACCCAAUCACUGGGAGGGAC____ACUACCCAUGCAC__ACA_ACUCCGGGGCGCGGGAAC ..((((....(((((((.((.....)).)).))))).....)))).((((.....))))..............(((.................))).......... (-15.41 = -16.41 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:56 2006