| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,108,470 – 25,108,581 |
| Length | 111 |
| Max. P | 0.638921 |
| Location | 25,108,470 – 25,108,581 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.48 |
| Mean single sequence MFE | -24.45 |
| Consensus MFE | -15.82 |
| Energy contribution | -15.66 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25108470 111 + 27905053 GCCGCAGUGCGUGCUC-CGCAAGUUUAAGUGGCUUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUU-UUGUCCAAUAAACCGAAAAUUAUAUGCACGGGGGCAUUAUAUA-------UCC (((.(.(((((((...-((((((....((.(((.......))).))..))).)))......(((((-((.............)))))))))))))).).)))........-------... ( -27.12) >DroVir_CAF1 49829 110 + 1 -----UGUGCGUGCGCUCGCACUUUAAAGUGGCUUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUU-UUGUCCAAUAAAACGAAAAUUAUAUGCAUAAAGG----GUAUGCCACACACAC -----((((.((((....))))......(((((.......(((........)))((((......((-((((........)))))).((((....)))).))----))..))))).)))). ( -30.00) >DroPse_CAF1 41914 105 + 1 ---UUAGUGCGUGCUC-CAUAAGUUUAAGUGGCUUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUUUUUGUCCAAUAAAACGAAAAUUAUAUGCAUAAAGG----GUAUA-------CUC ---...((((((((.(-((..((....((.(((.......))).))..))))).)).....((((((((((........)))))))))).))))))...((----(....-------))) ( -22.00) >DroYak_CAF1 38779 109 + 1 GCCGCAGUGCGUGCUU-UGCAAGCUUAAGUGGCAUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUU-UCGUCCAAUAAACCGAAAAUUAUAUGCACACA--UACCAUAUA-------ACC ...((..((((.....-)))).))....(((((((.(((((((........)))..........((-(((..........))))))))).)))).))).--.........-------... ( -21.40) >DroMoj_CAF1 46783 110 + 1 GCCUGUGUGCGUGUGCUCGGGUUUUAAAGUGGCUUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUU-UUGUCCAAUAAAAUGAAAAUUAUAUGCAUAAAGG----GUAUA-----UAUAA .(((.((((((((((...((((.((((((.(((.......))).))...)))).)))).....(((-((((...)))))))......)))))))))).)))----.....-----..... ( -28.20) >DroAna_CAF1 42268 95 + 1 ---UUAGUGCGUGCUC-CAUAAGUUUAAGUGGCUUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUU-UUGUCCAAUAAAACGAAAAUUAUAUGCAUA--------------------UGC ---...((((((((.(-((..((....((.(((.......))).))..))))).))........((-((((........)))))).....)))))).--------------------... ( -18.00) >consensus ___UCAGUGCGUGCUC_CGCAAGUUUAAGUGGCUUUUAAUGCCUCUAUCUUGGCGCCCAAUUAAUU_UUGUCCAAUAAAACGAAAAUUAUAUGCAUAAAGG____GUAUA_______UAC ......(((((((...............(.(((.......(((........)))))))...(((((.((((........)))).))))))))))))........................ (-15.82 = -15.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:55 2006