Locus 9494

Sequence ID 3R_DroMel_CAF1
Location 25,105,255 – 25,105,359
Length 104
Max. P 0.982937
window15200

overview

Window 0

Location 25,105,255 – 25,105,359
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 73.66
Mean single sequence MFE -26.03
Consensus MFE -7.92
Energy contribution -9.12
Covariance contribution 1.20
Combinations/Pair 1.07
Mean z-score -2.98
Structure conservation index 0.30
SVM decision value 1.93
SVM RNA-class probability 0.982937
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25105255 104 - 27905053
--AUUAUAGAGUAU-ACCCUUUCCUAGGGUAUGCUAAGUGCACAGAUCUCUGUUUGUAUUGAGUGCUCCAUAAUCGAGCAGUCUCCCUGCCAAAGUUCAUUUUUCCU
--.......(((((-(((((.....)))))))))).(((((((((....))))..)))))((.(((((.......))))).))........................ ( -29.30)
>DroSec_CAF1 34185 104 - 1
--AGUAUGCAGUAU-ACCCUUUCCUAGGGUAUGCUAAGUGCACAGAUCUCUGUAUGCAUUGAGUGCUCCAUUAUGGCCCAAUCUCCCUGCCAAAGUUCAGCUUCCCU
--.((((..(((((-(((((.....))))))))))..))))((((....)))).......(((.(((..(((.((((...........)))).)))..))))))... ( -30.70)
>DroSim_CAF1 35146 104 - 1
--AGUAUGCAGUAU-ACCCUUUCCUAGGGUAUGCUAAGUGCACAGAUCUCUGUAUGCAUUGAGUGCUCCAUAAUGGACCAAUCUCCCUGCCAAAGUUCAGCUUCCCU
--.((((..(((((-(((((.....))))))))))..))))((((....))))..(((..(((((.(((.....))).))..)))..)))................. ( -31.20)
>DroEre_CAF1 34589 92 - 1
GCAAAAUCUAGUAU-ACCCACUCCUAGGGUAUGCUAAGUGCACAGAUCUC--------------GCUCCAUAAUGGAUCAAUCUCCUUGCCAAAGUUCAUUUUCCCU
((((....((((((-((((.......))))))))))........(((((.--------------..........))))).......))))................. ( -20.40)
>DroYak_CAF1 35408 104 - 1
--UAAAUCUAGUAU-ACCCUAUCCUAGGGUAUGCUAAGUGCACAGAUCUCUGUAUGCAUUGACUGUUCCAUAAUGGACCAAUCUCCUUGCCAAAGUUCAUUUUUCCU
--......((((((-((((((...))))))))))))(((((((((....))))..)))))((.((.(((.....))).)).))........................ ( -28.10)
>DroAna_CAF1 39276 91 - 1
--GAAAUCUCAAAAACCCCUUUCAAAGGGUGUCAUAUUU--------------AAGAACUCCCCGUUUCAUAAUGGAGCAAUCUCAUUGCUAAACUUCAGUUCCUCU
--............((((((.....)))).)).......--------------..(((((..(((((....)))))((((((...)))))).......))))).... ( -16.50)
>consensus
__AAAAUCUAGUAU_ACCCUUUCCUAGGGUAUGCUAAGUGCACAGAUCUCUGUAUGCAUUGAGUGCUCCAUAAUGGACCAAUCUCCCUGCCAAAGUUCAGUUUCCCU
.........(((((.(((((.....)))))))))).............................(.(((.....))).)............................ ( -7.92 =  -9.12 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:53 2006