Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,103,742 – 25,103,853 |
Length | 111 |
Max. P | 0.539773 |
Location | 25,103,742 – 25,103,853 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -20.67 |
Energy contribution | -20.28 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.14 |
Mean z-score | -1.38 |
Structure conservation index | 0.73 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25103742 111 - 27905053 GGGGGACACAAGAGCGUGUUGCAAAAACUCACAACAUGCCACGCACUCCGCUUCCCCGAUGCUUCCCCAGUAG-AUCCCCUCCUACAAA-----AAGAUCAUCAGGUUCUCAACUUU ((((((.....(.((((((((..........)))))))))..((.....))))))))((((..((....((((-........))))...-----..)).)))).............. ( -26.70) >DroSec_CAF1 32679 107 - 1 GGGGGACACAAGAGCGUGUUGCAAAAACUCACAACAUGCCACGCACUCCGCUUCCCCGUUGU--UCCCAGUAG-AUCC-C-CCUACAAA-----AAGAUCAUCAGGUUCUCAAGUUU .((((((((..(.((((((((..........)))))))))..((.....))......).)))--)))).((((-....-.-.))))...-----....................... ( -25.10) >DroSim_CAF1 33634 108 - 1 GGGGGACACAAGAGCGUGUUGCAAAAACUCACAACAUGCCACGCACUCCGCUUCCCCGAUGC--CCCCAGUAG-AUCCCC-CCUACAAA-----AAGAUCAUCAGGUUCUCAAGUUU (((((.(((..(.((((((((..........)))))))))..((.....))......).)))--)))).((((-......-.))))...-----....................... ( -25.80) >DroEre_CAF1 33051 107 - 1 GGGGGACACAAGAGCGUGUUGCAAAAACUCACAACAUGCCACGCACUCUGCUUCCCCGAUUC--CCCCAGUAG-AUCC-C-UCUACAAG-----AAGCCCCUCGGGUUCUUAAGUUU ((((((.....(.((((((((..........)))))))))..((.....)).........))--)))).((((-(...-.-)))))(((-----((.((....)).)))))...... ( -34.50) >DroYak_CAF1 33843 107 - 1 GGGGGACACAAGAGCGUGUUGCAAAAACUCACAACAUGCCACGCACUCUGCUUCCCCGAUUC--CCCCCGUAG-AUCC-C-UCUACGAA-----AAGUCCAUCAGGUUCUCAAGUUU ((((((.....(.((((((((..........)))))))))..((.....)).........))--))))(((((-(...-.-))))))..-----....................... ( -29.10) >DroPer_CAF1 37042 113 - 1 GGGGGACACAAGAGCGUGUUGCAAUGUCUCACAACAUGCCACGCACUAUGCUUCUUCUGUAC--GAUCAGCCGGGGCA-C-GCUGCAGAGGAACGAGAGAACCAGAGAAGGAACUUC (((.(((((......))))).)..(.((((............((.....))(((((((((((--(....((....)).-)-).)))))))))).)))).).)).............. ( -29.60) >consensus GGGGGACACAAGAGCGUGUUGCAAAAACUCACAACAUGCCACGCACUCCGCUUCCCCGAUGC__CCCCAGUAG_AUCC_C_CCUACAAA_____AAGAUCAUCAGGUUCUCAAGUUU ((((((.....(.((((((((..........)))))))))..((.....))))))))............((((.........))))............................... (-20.67 = -20.28 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:50 2006