Locus 9491

Sequence ID 3R_DroMel_CAF1
Location 25,103,046 – 25,103,136
Length 90
Max. P 0.969995
window15196

overview

Window 6

Location 25,103,046 – 25,103,136
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 90.92
Mean single sequence MFE -27.28
Consensus MFE -22.73
Energy contribution -24.45
Covariance contribution 1.72
Combinations/Pair 1.04
Mean z-score -2.98
Structure conservation index 0.83
SVM decision value 1.65
SVM RNA-class probability 0.969995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25103046 90 + 27905053
ACACGCAACUUCGGAGGCUUGAAUCGAAGCCUCUGCAGAAGCCUCCU-GUUCACUCCUCAUCGAGGAUAAACGGAAACGAACAUUGACAAC
....((..((.(((((((((......))))))))).))..))....(-((((..(((((...))))).....(....))))))........ ( -29.70)
>DroSec_CAF1 31958 90 + 1
ACACGCAACUUCGGAGGCUUGAAUCGAAGCCUCUGCAGAAGCCUCCU-GUUCACUCCUCAUCGAGGAUAAACGGAAACGAACAUUGACAAC
....((..((.(((((((((......))))))))).))..))....(-((((..(((((...))))).....(....))))))........ ( -29.70)
>DroSim_CAF1 32918 90 + 1
ACACGCAACUUCGGAGGCUUGAAUCGAAGCCUCUGCAGAAGCCUCCU-GUUCACUCCUCAUCGAGGAUAAACGGAAACGAACAUUGACAAC
....((..((.(((((((((......))))))))).))..))....(-((((..(((((...))))).....(....))))))........ ( -29.70)
>DroEre_CAF1 32353 90 + 1
ACACGCAACUUCGGAGGCUUGAAUCGAAGCCUCCGCAGAAGCCUCCU-GUUCACUCCUCAUCGAGGAUAAACGGAAACGAACAUUGACAAC
....((..((.(((((((((......))))))))).))..))....(-((((..(((((...))))).....(....))))))........ ( -31.90)
>DroYak_CAF1 33077 90 + 1
ACACGCCACUUCGGAGGCUUGAAUCGAAGCCUCUGCAGAAGCCUCCU-GUUCGCUCCUCAUCGAGGAUAAACGGAAACGAACAUUGACAAC
....((..((.(((((((((......))))))))).))..))....(-((((..(((((...))))).....(....))))))........ ( -28.90)
>DroAna_CAF1 36700 88 + 1
ACACGCAACUCUUCAGGCUCGAAUGAUUGCCUCCUCAGAAGCCGCCUUCUUCAGUCCACA---AAGCUAAACGGAAACGUACAUUGACAAC
....((........((((..........))))....(((((....)))))..........---..))...(((....)))........... ( -13.80)
>consensus
ACACGCAACUUCGGAGGCUUGAAUCGAAGCCUCUGCAGAAGCCUCCU_GUUCACUCCUCAUCGAGGAUAAACGGAAACGAACAUUGACAAC
....((..((.(((((((((......))))))))).))..))......((((..(((((...))))).....(....)))))......... (-22.73 = -24.45 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:49 2006