Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,127,760 – 3,127,861 |
Length | 101 |
Max. P | 0.954067 |
Location | 3,127,760 – 3,127,861 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 94.06 |
Mean single sequence MFE | -50.47 |
Consensus MFE | -47.28 |
Energy contribution | -48.02 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.08 |
Mean z-score | -2.03 |
Structure conservation index | 0.94 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3127760 101 + 27905053 GGCAUCAGGAAGGGCGAGGGGGCGGAUGUGCCGGGCGUGGGCGGACCAAGGGCGCCCAUGUAGCCCCCACGCUUCAGCUGAUCCUUCAGCAUGUCCAUGUC (((((..(((.(((((.((((((((.....))..(((((((((..(....).))))))))).)))))).)))))..(((((....)))))...)))))))) ( -52.60) >DroSec_CAF1 3425 101 + 1 GGCAUCAGGAAGGGCGAGGGGGCGGGUGUGCCGGGCGUGGGCGGCCCAAGGGCGCCCAUGUAGCCCCCACGCUUCAGCUGAUCCUUCAGCAUGUCCAUGUC (((((..(((.(((((.((((((.((....))..(((((((((.((....))))))))))).)))))).)))))..(((((....)))))...)))))))) ( -56.90) >DroSim_CAF1 3803 101 + 1 GGCAUCAGGAAGGGCGAGGGGGCGGGUGUGCCGGGCGCGGGCGGCCCAAGGGCGCCCAUGUAGCCCCCACGCUUCAGCUGAUCCUUCAGCAUGUCCAUGUC (((((..(((.(((((.((((((....((((...))))(((((.((....))))))).....)))))).)))))..(((((....)))))...)))))))) ( -52.60) >DroYak_CAF1 3606 101 + 1 GGCAUCAGAAAGGGCGAGGGGGUGGAUGUACCGGGAGUGGGCGGUCCGAGGGCGCCCAUGUAUCCUCCACGCUUCAGCUGAUCCUUCAGCAUGUCCAUGUU ...........(((((.(((((((((......(((.(((((((.((....)))))))))...)))))))).)))).(((((....))))).)))))..... ( -39.80) >consensus GGCAUCAGGAAGGGCGAGGGGGCGGAUGUGCCGGGCGUGGGCGGCCCAAGGGCGCCCAUGUAGCCCCCACGCUUCAGCUGAUCCUUCAGCAUGUCCAUGUC (((((..(((.(((((.((((((((.....))..(((((((((.((....))))))))))).)))))).)))))..(((((....)))))...)))))))) (-47.28 = -48.02 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:20 2006