Locus 9489

Sequence ID 3R_DroMel_CAF1
Location 25,096,908 – 25,096,999
Length 91
Max. P 0.604564
window15193

overview

Window 3

Location 25,096,908 – 25,096,999
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.75
Mean single sequence MFE -26.73
Consensus MFE -17.43
Energy contribution -18.93
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.33
Structure conservation index 0.65
SVM decision value 0.14
SVM RNA-class probability 0.604564
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25096908 91 - 27905053
CCUUGCCUCACCUUGCCA---CUCCCUCCUGGUAUUUC-------CGAUUCCC--GAUCGCCGAACAAUGGCAA---AUGAAGGGUAAGAAACCGGCAAGGGUUGU
((((((((((..((((((---...((....))......-------(((((...--)))))........))))))---.)))..(((.....))))))))))..... ( -26.90)
>DroPse_CAF1 30154 83 - 1
CCUUGCCUCACCUUGCCA---CACCCU---AA--------------GAAUCGCAGGAGCCUCAGACAAAGCCAAGGGA-AAAGGGUAAG--ACCAGGAAGGGUUGC
((((.(((...((((((.---..((((---..--------------(..((..((....))..)).....)..)))).-....))))))--...)))))))..... ( -19.80)
>DroSec_CAF1 25847 88 - 1
CCUUGCCUCACCUUGCCA---CUCCCUCCUGUUAUUUC-------CGAUUCCC--GAUCGCCGAACAAUGGC-----A-GAAGGGUAAGAAACCGGCAAGGGUUGU
(((((((....((((...---..((((.((((((((((-------(((((...--)))))..))..))))))-----)-).)))))))).....)))))))..... ( -27.60)
>DroSim_CAF1 26789 90 - 1
CCUUGCCUCACCUUGCCA---CUCCCUCCUGUUAUUUC-------CGAUUCCC--GAUCGCCGAACAAUGGCUG---A-GAAGGGUAAGAAACCGGCAAGGGUUGU
(((((((....((((((.---((..(((..((((((((-------(((((...--)))))..))..)))))).)---)-).)))))))).....)))))))..... ( -28.40)
>DroEre_CAF1 26301 87 - 1
CCUUGCCUCACCUUGCCGCCACUCC---CUGGUAUUUC-------CGAUGCCC--GAUCGCCGAACAAUGGC-----A-GAAGGGUAA-AAAGCGGCAAGGGUUGU
..........(((((((((....((---((((((((..-------.)))))).--....((((.....))))-----.-..))))...-...)))))))))..... ( -32.60)
>DroYak_CAF1 26811 98 - 1
CCUUGCCUCACCUUGCCGCCACUUCCUCCUGGUAUUUCCGAUUUCCGAUUCCC--GAUCGCCGAACAAUGAC-----A-AAAGGGUAAGAAACCGGCAAGGGUUGU
(((((((....((((((((((........))))............(((((...--)))))............-----.-....)))))).....)))))))..... ( -25.10)
>consensus
CCUUGCCUCACCUUGCCA___CUCCCUCCUGGUAUUUC_______CGAUUCCC__GAUCGCCGAACAAUGGC_____A_GAAGGGUAAGAAACCGGCAAGGGUUGU
(((((((....((((((.............................((((.....))))(((.......)))...........)))))).....)))))))..... (-17.43 = -18.93 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:47 2006