| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,096,436 – 25,096,533 |
| Length | 97 |
| Max. P | 0.925996 |
| Location | 25,096,436 – 25,096,533 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 80.99 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -22.38 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25096436 97 - 27905053 AUUUGCUUUUGCACUCUGCACUGUCUGGCAGGCUAAAAAUUUUCCGUCUCGUUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUUU-GCAUUUUCCCA ...(((....)))...(((((((.((((((.((...........((......))(((((....))))))).))))))...))))..-)))........ ( -28.90) >DroSec_CAF1 25357 97 - 1 AUUUGCUUUUGCACUCUGCACUGGCUGGCAGGCUAACAAUUUUCCGUCUGGUUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUUU-GGAUUUUCCCA ...(((....))).((((.(((((((((((.((...(((((........)))))(((((....))))))).))))))))..))).)-)))........ ( -35.80) >DroSim_CAF1 26299 97 - 1 AUUUGCUUUUGCACUCUGCACUGGCUGGCAGGCUAACAAUUUUCCGUCUCGUUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUUU-UGAUUUUCCCA ...(((....))).((.((...((((((((.((...((((..........))))(((((....))))))).))))))))...))..-.))........ ( -31.60) >DroEre_CAF1 25773 90 - 1 AUUUG-----GC--ACUGCACCGGCUGGCAGGCUGG-AAUUUUCCGUUUCGCUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUUUUGAAUUUUCCCA (((..-----(.--((((....((((((((.((.((-(....))).........(((((....))))))).)))))))).)))).)..)))....... ( -34.10) >DroYak_CAF1 26289 85 - 1 AUU------------CUGCACUGGCUGGCAGGCUGG-AAUUUUCCGUUUCGUUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUUUUGGAUUUUCCCA (((------------(.((...((((((((.((.((-(....))).........(((((....))))))).))))))))...))...))))....... ( -32.70) >DroAna_CAF1 30188 79 - 1 AUUU------------UCCACCAGCUUU----UCCG-AAUUUUCCGAUUCGUUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUA--GGAUUCCCCUA ....------------(((((.((((..----..((-((((....))))))...(((((....))))).......))))...)).--)))........ ( -19.80) >consensus AUUUG_____GC__UCUGCACUGGCUGGCAGGCUAA_AAUUUUCCGUCUCGUUGGCGCUGAAAAGCGCGUGUGCCAGCUUUAGUUU_GGAUUUUCCCA ......................((((((((.((...........((......))(((((....))))))).))))))))................... (-22.38 = -23.10 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:46 2006