| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,095,859 – 25,095,949 |
| Length | 90 |
| Max. P | 0.735561 |
| Location | 25,095,859 – 25,095,949 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -13.14 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.735561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25095859 90 - 27905053 AA------CUCCCUGGGCGUGACACGUCACAAUAUGUCCACAAACGCCCCUCCAG-UGG--------------AUUUCGU-UGC-CCCGCAGCCUGCUGGCAAAUAAAUCUCC .(------((....((((((((((..(....)..)))).....))))))....))-)((--------------((((..(-(((-(..((.....)).)))))..)))))).. ( -25.20) >DroPse_CAF1 28968 87 - 1 AA------CUCCCUGGGCGUGACACGUCACAAUAUGUCCACACACGCCUCUCUCCCUCA--------------CUCUCGG-G-----CACUACCUUCUGGCAAAUAAAUCUCC ..------......(((((((..((((......)))).....)))))))....(((...--------------.....))-)-----.....((....))............. ( -14.00) >DroEre_CAF1 25203 90 - 1 AA------AUCCCUGGGCGUGACACGUCACAAUAUGUGCACACACGCCCCGCCGU-UGG--------------AUUUCUU-GGC-CCCGCAGCCUGCUGGCAAAUAAAUCUCC ..------......(((((((.(((((......)))))....)))))))......-.((--------------((((.((-.((-(..((.....)).))).)).)))))).. ( -25.30) >DroYak_CAF1 25695 96 - 1 AACUACAACUCCCUGGGCGUGACACGUCACAAUAUGUGCACACACGCCCCUCCAG-UGG--------------AUUUCGG-GUC-CCCGCCGCCUGCUGGCAAAUAAAUCUCC ..............(((((((.(((((......)))))....)))))))..((((-..(--------------....(((-...-.)))....)..))))............. ( -29.00) >DroAna_CAF1 29574 106 - 1 AA------CUCCCUGGGCGUGACACGUCACAAUAUAUCCACAAACGCCCCGCCAG-CGAUCGCAGAUCCUAAGAGUCCUGCGGCUGCUGCAGCCUGCUGGCAAAUAAAUCUCC ..------......((((((.......................)))))).(((((-((...((((.((....))...))))(((((...))))))))))))............ ( -34.70) >DroPer_CAF1 28777 87 - 1 AA------CUCCCUGGGCGUGACACGUCACAAUAUGUCCACACACGCCUCUCUCCCUCA--------------CUCUCGG-G-----CACUACCUUCUGGCAAAUAAAUCUCC ..------......(((((((..((((......)))).....)))))))....(((...--------------.....))-)-----.....((....))............. ( -14.00) >consensus AA______CUCCCUGGGCGUGACACGUCACAAUAUGUCCACACACGCCCCUCCAG_UGA______________AUUUCGG_GGC_CCCGCAGCCUGCUGGCAAAUAAAUCUCC ..............((((((((....)))).....((......))))))..........................................(((....)))............ (-13.14 = -13.42 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:45 2006