Locus 9484

Sequence ID 3R_DroMel_CAF1
Location 25,094,181 – 25,094,290
Length 109
Max. P 0.837258
window15187

overview

Window 7

Location 25,094,181 – 25,094,290
Length 109
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 80.97
Mean single sequence MFE -33.60
Consensus MFE -18.88
Energy contribution -18.88
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -2.42
Structure conservation index 0.56
SVM decision value 0.74
SVM RNA-class probability 0.837258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25094181 109 - 27905053
CUUUCUCUGCCCGCCAACACCCAAAACAAACUAUGCCCGAAAAUUUGGAGGAGCAGUUCCAGAAAAGGUAGCAGUGGGUGAGG----GUCUAAAUACCCAAGGGGGGGAGAAG
..((((((.(((.....((((((..........(((((.....(((((((......)))))))...))..))).)))))).((----((......))))...))).)))))). ( -38.50)
>DroSec_CAF1 23138 106 - 1
CUUUCUCUGCCCGCGAACACCCAAAACAAACUAUGCCCGAAAAUUUGGAGGAGCAGUUCCAGAAAAGGUAGCAGUGGGUGAGG----GUCUAAAUACCCAAGG---GGAGAAG
.....(((.(((.....((((((..........(((((.....(((((((......)))))))...))..))).)))))).((----((......))))..))---).))).. ( -33.20)
>DroSim_CAF1 23558 106 - 1
CUUUCUCUGCCCACCAACACCCAAAACUAACUAUGCCCGAAAAUUUGGAGGAGCAGUUCCAGAAAAGGUAGCAGUGGGUGAGG----GUCUAAAUACCCAAGG---GGAGAAG
.....(((.(((.....((((((..........(((((.....(((((((......)))))))...))..))).)))))).((----((......))))..))---).))).. ( -33.20)
>DroEre_CAF1 23554 92 - 1
CUUUCUCUGCCCGCCAGG---------------GGCAGGGAAAUUUGGAGGAGCAGUUCCGGAAAAAGUAG---UGGGCGAGGGAGGGCCUAAGUAAGCGAGG---GGAGAAG
.(((((((((((.....)---------------))))))))))(((((((......)))))))........---(((((........)))))...........---....... ( -29.50)
>consensus
CUUUCUCUGCCCGCCAACACCCAAAACAAACUAUGCCCGAAAAUUUGGAGGAGCAGUUCCAGAAAAGGUAGCAGUGGGUGAGG____GUCUAAAUACCCAAGG___GGAGAAG
..((((((((((((...................((((......(((((((......)))))))...))))...)))))).(((.....)))...............)))))). (-18.88 = -18.88 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:41 2006