| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,093,724 – 25,093,814 |
| Length | 90 |
| Max. P | 0.691174 |
| Location | 25,093,724 – 25,093,814 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.25 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -5.32 |
| Energy contribution | -6.91 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.29 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25093724 90 - 27905053 AUAUAAGCAAUGGGGCAUUAGACAAA---------CUAUGCCGCCGAUCUAUAUUUAGAUUGAUAUAUAAC--------------ACAAGGAAG-U--GGCUUAUAAAGCCAACAU .(((((((...(.(((((.((.....---------))))))).)(((((((....)))))))........(--------------((......)-)--)))))))).......... ( -23.60) >DroPse_CAF1 26726 84 - 1 -GAUAAGCAAUAGGGGAUUAGAUACAGCCCCAGAAUUAU-------AGCUAUAUUUGGAUUGCCA-----C---------------CAUAGAAA-U--GGGUUAUAA-AUGAACAA -...........((((...........))))....((((-------(((......(((....)))-----(---------------(((....)-)--)))))))))-........ ( -15.90) >DroSec_CAF1 22684 87 - 1 AUAUAAGCAAUAGGGCAUUAGACAAA---------CUAUGC---CGAUCUAAAUUUAGAUUGAUAUAUCAC--------------ACAAGGAAG-U--GGCUUAUAAAGCCAACAU .(((((((.....(((((.((.....---------))))))---)((((((....)))))).........(--------------((......)-)--)))))))).......... ( -19.70) >DroSim_CAF1 23109 87 - 1 AUAUAAGCAAUAGUGCAUUAGACAAA---------CUAUGC---CGAUCUAUAUUUAGAUUGAUAUAUCAC--------------ACAAGGAAG-U--GGCUUAUAAAGCCAACAU .(((((((......((((.((.....---------))))))---(((((((....)))))))........(--------------((......)-)--)))))))).......... ( -18.60) >DroYak_CAF1 23465 92 - 1 -UAUAAGCAAUAGGGCAUUAGACAAA---------CUACGC---CGAUCUAUAUUUAGAUUGAUAUAUCACACG-------CAGCACAAAGAAG-U--GGCUUAUA-AGCCAACAU -(((((((.....(((..(((.....---------))).))---)((((((....)))))).............-------...(((......)-)--))))))))-......... ( -17.50) >DroAna_CAF1 27353 102 - 1 -GAUAAGCAAUAGGGAAUUAGACAAA---------CUAUUU---GGAACUAUAUUUAGAUUGUCAUAUAACGAAAAGGGGGCAGAAUAAAUAAAAUAGAGUUCCUAAA-GCAACAU -.....(((((((.............---------))))).---((((((.((((((..(((((......(.....)..)))))..))))))......))))))....-))..... ( -15.82) >consensus _UAUAAGCAAUAGGGCAUUAGACAAA_________CUAUGC___CGAUCUAUAUUUAGAUUGAUAUAUCAC______________ACAAAGAAG_U__GGCUUAUAAAGCCAACAU .(((((((......((((...................))))...(((((((....))))))).....................................))))))).......... ( -5.32 = -6.91 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:40 2006