| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,092,055 – 25,092,145 |
| Length | 90 |
| Max. P | 0.548545 |
| Location | 25,092,055 – 25,092,145 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.54 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.77 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25092055 90 - 27905053 ACACAAUGAGCCGAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGGUCCUUUUGUCCUUUCGAAG--------GAAGGGGAACUGGGACGUGCAAG .(((......(((((((..((((.........))))....)))))))(((((....(((((((....--------)))))))....)))))))).... ( -34.60) >DroSec_CAF1 21052 90 - 1 ACACAAUGGGCCGAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGGUCCUUUUGUCCUUUCGAUG--------GAAGGGGAACUGGGACGUGCAAG .(((......(((((((..((((.........))))....)))))))(((((....(((((((....--------)))))))....)))))))).... ( -32.10) >DroSim_CAF1 21471 90 - 1 ACACAAUGGGCCGAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGGUCCUUUUGUCCUUUCGAAG--------GAAGGGGAACUGGGACGUGCAAG .(((......(((((((..((((.........))))....)))))))(((((....(((((((....--------)))))))....)))))))).... ( -34.60) >DroEre_CAF1 21461 89 - 1 ACACAAUGGGCCGAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGGUCCUUUUGUGCCGUCGA---------GGGAGGGGAACUGAGACGUGCAAG ..((((.((((((((((..((((.........))))....))))).)))))..))))((((((..---------((........))..)))).))... ( -29.10) >DroYak_CAF1 21794 98 - 1 ACACAAUGGGCCAAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGGUCCUUUUGUCCCAUGGACGGUGGCGGGAGGGGGGAACUGAGACGUGCAAG .(((......(((((((..((((.........))))....))))))).((((((((((((......)).))))))))))............))).... ( -29.80) >DroAna_CAF1 25951 68 - 1 A--CAAU-AGCCGAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGACCCUAUUGUU------A--------------AGGAAC-------UGCAAG (--((((-(((((((((..((((.........))))....)))))))...))))))).------.--------------......-------...... ( -17.50) >consensus ACACAAUGGGCCGAUGUGCGCCGGAAGAAUAAUGGCAUAAACAUUGGGUCCUUUUGUCCUUUCGA_G________GAAGGGGAACUGGGACGUGCAAG .(((......(((((((..((((.........))))....))))))).(((((((.....................)))))))........))).... (-16.15 = -16.77 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:40 2006