Locus 9479

Sequence ID 3R_DroMel_CAF1
Location 25,087,259 – 25,087,352
Length 93
Max. P 0.863888
window15180

overview

Window 0

Location 25,087,259 – 25,087,352
Length 93
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 91.92
Mean single sequence MFE -22.53
Consensus MFE -21.40
Energy contribution -21.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.95
SVM decision value 0.84
SVM RNA-class probability 0.863888
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25087259 93 - 27905053
---------UUUCCUGCUUUCCUGCUUUUUGCCUUCUUGCCCCUUCCAAGGCGAACUGGCUGUCCGGAUCCCAGGACGUCGAAGCACAGCCCAUCCUAUCCU
---------......(((....((((((..(((...(((((........)))))...))).((((........))))...)))))).)))............ ( -23.60)
>DroSec_CAF1 16387 93 - 1
---------UUUCCUGCUUUCCUGCUUUUUGCCUUCUUGCCCCUUCCAAGGCGAACUGGCUGUCCGGAUACCAGGACGUCCCAGCACAGCCCAUCCUAUCCU
---------......(((....((((....(((...(((((........)))))...))).((((........)))).....)))).)))............ ( -21.40)
>DroSim_CAF1 16469 102 - 1
CUUUCCUGCUUUCCUGCUUUCCUGCUUUUUGCCUUCUUGCCCCUUCCAAGGCGAACUGGCUGUCCGGAUCCCAGGACGUCCCAGCACAGCCCAUCCUAUCCU
...(((((...(((.((......)).....(((...(((((........)))))...))).....)))...))))).......................... ( -22.60)
>consensus
_________UUUCCUGCUUUCCUGCUUUUUGCCUUCUUGCCCCUUCCAAGGCGAACUGGCUGUCCGGAUCCCAGGACGUCCCAGCACAGCCCAUCCUAUCCU
...............(((....((((....(((...(((((........)))))...))).((((........)))).....)))).)))............ (-21.40 = -21.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:35 2006