Locus 9477

Sequence ID 3R_DroMel_CAF1
Location 25,077,322 – 25,077,422
Length 100
Max. P 0.539500
window15178

overview

Window 8

Location 25,077,322 – 25,077,422
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -18.64
Consensus MFE -11.74
Energy contribution -12.34
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.63
SVM decision value 0.01
SVM RNA-class probability 0.539500
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25077322 100 + 27905053
GACAUACAAAUUUUCGUAUAACAGUCUGCCAAAAAGUCGCCGCUGUUAUACUCAAUUUUUUACGGACACAGCGCCCUCUGACAUUUACAAAGUGCAACUA
...............((((((((((..((.........)).))))))))))...................((((.................))))..... ( -15.23)
>DroSec_CAF1 6427 99 + 1
GACAUACAAGCUUACGUAUAACAGUCUGCCAAAAAGUCGCCGCUGUUAUACUCACUU-UCAACGGACACAGCGCCCUCUAGCAUAUACAAAGUGCAACUA
.........(((...((((((((((..((.........)).))))))))))......-.....(....))))........((((.......))))..... ( -17.00)
>DroSim_CAF1 6441 100 + 1
GACAUACAACCUUACGUAUAACAGUCUGCCAAAAAGUCGCGGCUGUUAUACUCACUUGUUAACAGCCACAGCGCCCUCUGGCAUAUACAAAGUGCAACUA
...............(((((((((.((((.........))))))))))))).(((((((.....((((.((....)).))))....)).)))))...... ( -25.40)
>DroEre_CAF1 6405 96 + 1
AACAUACAACCUGUUGUAUAACAGUCUACCAAAAACUCGCCGCUGUUAUACUCACUC----ACAAUUAAAGCGCCCUCUGGCCCUCACAAUUCACAACUG
............(((((((((((((................))))))))........----........((.(((....))).))........))))).. ( -13.59)
>DroYak_CAF1 6584 97 + 1
AACAUA---CCUUUUGUAUAACAGUCUGCCAAAAUGUCGCCGCUGUUAUACAAACUUGUCUGCAGACACAGCGCCCUCUGGCCCUCACAAAUUGCAACUA
......---...(((((((((((((..((.........)).)))))))))))))...((.(((((....((.(((....))).))......))))))).. ( -22.00)
>consensus
GACAUACAACCUUUCGUAUAACAGUCUGCCAAAAAGUCGCCGCUGUUAUACUCACUU_UCAACAGACACAGCGCCCUCUGGCAUUUACAAAGUGCAACUA
...............(((((((((.(.((.........)).)))))))))).....................(((....))).................. (-11.74 = -12.34 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:34 2006