| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,076,963 – 25,077,073 |
| Length | 110 |
| Max. P | 0.982885 |
| Location | 25,076,963 – 25,077,073 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.72 |
| Mean single sequence MFE | -30.25 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.982885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25076963 110 - 27905053 UAAUCCU----CAAAA-AAAGUGUGGAUGAAAGCCAAA-CGAGGUUUGUGGCAAUUAGCCAAAGGCAGGGCCCUAGCCGCAGUAAUAUUU-CGAGUUACAUGCCAUUUUCCAUGCCA .......----.....-...(((((((...(((((...-...))))).((((.....))))..((((.(((....)))...(((((....-...))))).))))....))))))).. ( -29.60) >DroSec_CAF1 6054 110 - 1 UAAUCCU----CAAAA-AAAGUGUGGAUGAAAGCCAAA-CGAGGUUUGUGGCAAUUAGCCAAAGGCAGUGCCCUAGCCACAGAAAUAUUU-CGAGCUUCAGGCCAAUUUCCAUGCCA .......----.....-...(((((((.....(((...-.((((((((((((.....))))..(((((....)).)))............-)))))))).))).....))))))).. ( -29.90) >DroSim_CAF1 6061 111 - 1 UAAUCCU----CAAAAAAAAGUGUGGAUAAAAGCCAAA-CGAGGUUUGUGGCAAUUAGCCAAAGGCAGUGCCCUAGCCACAGAAAUAUUU-CGAGCUUCAGUCCAAUUUCCAUGCCA .......----............(((((..((((....-(((((((((((((.....(((...)))((....)).)))))))....))))-)).))))..)))))............ ( -25.10) >DroEre_CAF1 6032 93 - 1 UAAUCCU----CAAG--AAAGUGUGGCUUAAAGCCAAA-CGUGGUUUGUGGCUAUUAGCCAAAGGCAGGGCC----------------UU-UGAGCUACAUGCCCAUUUCCAUGCCA .......----....--...((.((((.....)))).)-)((((..((.(((...(((((((((((...)))----------------))-)).))))...)))))...)))).... ( -32.60) >DroYak_CAF1 6261 93 - 1 UAAUGCC----CAAAAAAAAGUGUGGAUUAAAGCCAAA-CUUGGUUUGUGGCAAUAAGCCAAAGGCAGGGC------------------U-CCAGCUACAAAAAUAUUUCCAUGCCA .......----.........(((((((...((((((..-..))))))(((((....((((........)))------------------)-...))))).........))))))).. ( -24.30) >DroAna_CAF1 10692 106 - 1 UAAUCCCGGCACACAA-AAAGUGAGGAAAGGCGCCAAAGCGCGGUUUGUGGCAAUUAGCCAAAGGCAGGGCUUAUGCCACGAAUAUAUUUACGAG----------AGUUCCGUGCCA .......(((((((..-...))..((((..((((....)))).((((((((((...((((........))))..))))))))))...........----------..))))))))). ( -40.00) >consensus UAAUCCU____CAAAA_AAAGUGUGGAUAAAAGCCAAA_CGAGGUUUGUGGCAAUUAGCCAAAGGCAGGGCCCUAGCCACAGAAAUAUUU_CGAGCUACAGGCCAAUUUCCAUGCCA ....................(((((((...(((((.......))))).((((.....))))..(((...)))....................................))))))).. (-15.38 = -15.80 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:33 2006