Locus 9475

Sequence ID 3R_DroMel_CAF1
Location 25,075,490 – 25,075,610
Length 120
Max. P 0.662123
window15176

overview

Window 6

Location 25,075,490 – 25,075,610
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.72
Mean single sequence MFE -19.30
Consensus MFE -3.82
Energy contribution -5.06
Covariance contribution 1.24
Combinations/Pair 1.27
Mean z-score -1.63
Structure conservation index 0.20
SVM decision value 0.27
SVM RNA-class probability 0.662123
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25075490 120 - 27905053
AUUACCUUUAAAAUACCUUUCACAUGUAUUAGCACUUCAAAGCACUUUUACUUGCUUUAUUGACUUUGAAAUUAUUCAAUGUUCUGGAAGCUAGUUUCUUGACCGCUGCUGUACUUACUC
.........................((((.((((.....(((.......(((.(((((...(((.(((((....))))).)))...))))).)))..)))......))))))))...... ( -17.60)
>DroSec_CAF1 4668 101 - 1
AUUACCUUUCGA-----------ACUUAUUAGCAUUUUAAAGCACUUUUGC--------UUCACUUCCAAAUUCUUCAAAGUUCUUGAAGCUAGUAUCUUGACCGCUGCUGUACUUACUC
........((((-----------...(((((((......(((((....)))--------)).............(((((.....))))))))))))..)))).................. ( -14.30)
>DroSim_CAF1 4677 111 - 1
AUUACCUUUCGAGUACCUUACA-ACGUAUUAGCAUUUUAAAGCUUUUUCAA--------UUGACUUCGCAAUUCUUCAAAGUUCUUGAAGCUAGUAUCUUGACCGCUGCUGUACUUACUC
..........(((((.....((-(.((((((((..(((((((((((...((--------(((......)))))....)))))).))))))))))))).)))...((....))...))))) ( -19.40)
>DroEre_CAF1 4654 119 - 1
AAACCCUUUCGAAUUUCUUACGCAUUUAUUAGCAUUUUA-AGCACUUUUACUUGUCUUAUUGACCUCGAUUUGCUGCAAAGGUCUUAUUGCUAGUAUCUUGACCGCUGUUGUACUUACUC
......................((..((((((((...((-((.((((((.(..((...((((....))))..)).).)))))))))).))))))))...))................... ( -17.70)
>DroYak_CAF1 4833 116 - 1
UACAGCUUUCGAAUUUCUUA----UUCAUUAGCAUUUUAUUGCACUUUUACUUGCUUUAUUGACUUUGAUUUUAUUCAAAGGUUUUGGAGCUAGUGUCUUGACCGCUGUUGUUCCUACUC
.(((((..((((........----.......(((......))).....((((.((((((....((((((......))))))....)))))).))))..))))..)))))........... ( -27.50)
>consensus
AUUACCUUUCGAAUACCUUAC__AUUUAUUAGCAUUUUAAAGCACUUUUACUUG__UUAUUGACUUCGAAAUUCUUCAAAGUUCUUGAAGCUAGUAUCUUGACCGCUGCUGUACUUACUC
..........................(((((((........(((........)))...................(((((.....))))))))))))........................ ( -3.82 =  -5.06 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:32 2006