| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,070,814 – 25,070,917 |
| Length | 103 |
| Max. P | 0.907530 |
| Location | 25,070,814 – 25,070,917 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.86 |
| Mean single sequence MFE | -40.08 |
| Consensus MFE | -21.20 |
| Energy contribution | -23.40 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.907530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25070814 103 + 27905053 ----------GAGCAGUUGCUGGAUGGAGCGGGACAUCUGAUGGUAGUUUCGCUCCUUCCACUGAACAUUGGUGAGCAUGAUCUCCAGUGUCUGUUGGAUGGCCUGUUCCAAU ----------((((((..((((((.((((((..(((((....))).))..)))))).))).(..((((((((.((......)).)))))))...)..)..))))))))).... ( -43.20) >DroVir_CAF1 3 110 + 1 -AGCCCUG--GAGCACGUGUCGUAUGGAGGUGGAGACCUGUUUAUAGUUGCGCUCCUUCCACUGGACAUUGGUGAGCAUCGUCUCCAGGGUUUGCUGUAUGGCCUGUUCCAGG -...((((--(((((.(.(((((((((...(((((((.(((((((...((...(((.......)))))...)))))))..))))))).......))))))))))))))))))) ( -43.00) >DroPse_CAF1 656 111 + 1 CUGGCUUA--GAGGAGCUUCUGAAUGGAGCGCGACAUUUGGUGGUAGUUGCGCUCCUUCCAUUGCACGUUGGUGAGCAUCGUCUCGAGUGUCUGUUGAAUGGCCUGCUCCAGG ........--..(((((........(((((((((((((....))).))))))))))..(((((((((.....((((......)))).))))......)))))...)))))... ( -36.00) >DroGri_CAF1 3 110 + 1 -ACUUA--UCGAGCAGAGCCUCGACGGAACGGGUCACUUGUCGGUAGUUGCGCUCCUUCCACUGGACAUUGGUGAGCAUGGUCUCCAGGCUCUGUUGAAUGGCCUGUUCCAGA -.....--(((((......))))).(((((((((((....((..(((..((((((...(((........))).)))).(((...))).)).)))..)).)))))))))))... ( -39.60) >DroWil_CAF1 8273 110 + 1 -GCUUUUA--GAGCAGCUCCUGUAUGGAGCGUGACAAUUGGAUGUAGUUACGCUCCUUCCAUUGGACAUUUGUUAGCAUUGUCUCCAGAGUUUGUUGCAGAGCCUGUUCUAGC -....(((--(((((((((.((((.((((((((((.((.....)).)))))))))).....(((((.((.((....))..)).))))).......))))))).))))))))). ( -39.30) >DroAna_CAF1 4820 110 + 1 -UAAUCUA--GAGCAGCUGCUGGAUGGAGCGAGACAUCUGGUGGUAGUUUCGUUCCUUCCACUGGACAUUGGUGAGCAUUAUUUCCAGAGUCUGUUGGAUGGCCUGUUCCAAG -.......--((((((..(((....(((((((((((((....))).)))))))))).((((..((((.((((.((......)).)))).))))..)))).))))))))).... ( -39.40) >consensus _ACUUCUA__GAGCAGCUGCUGGAUGGAGCGGGACAUCUGGUGGUAGUUGCGCUCCUUCCACUGGACAUUGGUGAGCAUCGUCUCCAGAGUCUGUUGAAUGGCCUGUUCCAGG ..........((((((.........(((((((((((((....))).))))))))))...((..((((.((((.((......)).)))).))))..))......)))))).... (-21.20 = -23.40 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:29 2006