| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,061,680 – 25,061,800 |
| Length | 120 |
| Max. P | 0.859449 |
| Location | 25,061,680 – 25,061,800 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.25 |
| Mean single sequence MFE | -44.60 |
| Consensus MFE | -37.54 |
| Energy contribution | -38.02 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25061680 120 + 27905053 CCCAGCGGCACUGGGUUAACCUCGUCAGGAUUAGCCUCUGAUCGCCAGCUACGGUAGAAGCUCAAGGCCUGGGUAACGCAAUCGGAAACCUCGAACGAGCAUGCCCAGUCCGCCACUAUC ....((((.(((((((....((((((((((((((...))))))(((((((.(....).))))...))))))(((..((....))...)))....)))))...)))))))))))....... ( -41.70) >DroSec_CAF1 8302 120 + 1 CCCAGCGGAACUGGGUUAACCUCGUCAGGAUUAGCCUCCGAUCGCCAGCUGCGGUAGUAGCUCAAGGCAUGGGUAACGCAAUCGGAAACCUCGAACAAGCAUGCCCAGUCCGCCACCAUC ....(((((.((((((........((((((((.((..((.((.(((((((((....))))))...))))).))....))))))(....))).))........)))))))))))....... ( -42.19) >DroSim_CAF1 5637 120 + 1 CCCAGCGGAACUGGGUUAACCUCGUCAGGAUUAGCCUCCGAUCGCCAGCUGCGGUAGUAGCUCAAGGCCUGGGCAAUGCAAUCGGAAACCUCGAACAAGCAUGCCCAGUCCGCCACCAUC ....(((((...((((((((((....))).)))))))......(((((((((....))))))...)))(((((((.(((..((((.....))))....)))))))))))))))....... ( -46.10) >DroEre_CAF1 8229 120 + 1 CCCAGCGGAACUGGGUUAAGCUCGUCGGGAUUAGCCUCCAAACGCCAGUUGCGGAAGUAGCUCACGGCCUGGGAUACGCAAUCGGAAACCUCGUAGGUGCAUGCCCAGUUCGCCACCAUC ....(((.((((((((...((.(.(((((....((.(((....(((((((((....))))))...)))...)))...))....(....))))).).).))..)))))))))))....... ( -43.80) >DroYak_CAF1 5702 120 + 1 GCCAGUGGAACUGGGUUGAUCUCGUCGGGAUUAGCCUCCGAUCGCCAGCUGCGGAAGUAGCUCACGGCUCGGGUGACGCAAUCGGAAACCUCGUACGAGCAUGCCCACUGCGCCACCAUC ((((((((....((((((((((.....))))))))))((((..(((((((((....))))))...))))))).....(((...(....)(((....)))..))))))))).))....... ( -49.20) >consensus CCCAGCGGAACUGGGUUAACCUCGUCAGGAUUAGCCUCCGAUCGCCAGCUGCGGUAGUAGCUCAAGGCCUGGGUAACGCAAUCGGAAACCUCGAACGAGCAUGCCCAGUCCGCCACCAUC ....((((.(((((((....((((((..((((.((.((((...(((((((((....))))))...))).))))....))))))(....)...).)))))...)))))))))))....... (-37.54 = -38.02 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:26 2006